From 1cb2b5375cfbd058ccf55dea5f23c4831fe94f68 Mon Sep 17 00:00:00 2001
From: Olivier Coen <coen.olivier@gmail.com>
Date: Wed, 8 Apr 2026 16:05:28 +0200
Subject: [PATCH 1/2] re-introduce tests commented to avoid "no disk space
 left" errros

---
 tests/default.nf.test | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index c1eb409..908fb62 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -104,8 +104,7 @@ nextflow_pipeline {
         }
     }
     */
-    /*
-    // removed in CI because "No splace left on disk" error encountered
+
     test("-profile test_accessions_only") {
         tag "test_accessions_only"
 
@@ -165,7 +164,6 @@ nextflow_pipeline {
             )
         }
     }
-    */
 
     test("-profile test_one_accession_low_gene_count") {
         tag "test_one_accession_low_gene_count"
@@ -192,8 +190,7 @@ nextflow_pipeline {
             )
         }
     }
-    /*
-    // removed in CI because "No splace left on disk" error encountered
+
     test("-profile test_skip_id_mapping") {
         tag "test_skip_id_mapping"
 
@@ -219,7 +216,6 @@ nextflow_pipeline {
             )
         }
     }
-    */
 
     test("-profile test_dataset_custom_mapping_and_gene_length") {
         tag "test_dataset_custom_mapping_and_gene_length"

From 4999638d5251c186953f887e63985b330203df90 Mon Sep 17 00:00:00 2001
From: Olivier Coen <coen.olivier@gmail.com>
Date: Wed, 8 Apr 2026 16:06:54 +0200
Subject: [PATCH 2/2] increase max shards from 7 to 10 for nf-tests

---
 .github/workflows/nf-test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index c98d76e..1668cf7 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -50,7 +50,7 @@ jobs:
         env:
           NFT_VER: ${{ env.NFT_VER }}
         with:
-          max_shards: 7
+          max_shards: 10
 
       - name: debug
         run: |