-
Notifications
You must be signed in to change notification settings - Fork 3
Expand file tree
/
Copy pathmodules.json
More file actions
193 lines (193 loc) · 8.69 KB
/
modules.json
File metadata and controls
193 lines (193 loc) · 8.69 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
{
"name": "nf-cmgg/structural",
"homePage": "https://github.com/nf-cmgg/structural",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/annotate": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"bcftools/concat": {
"branch": "master",
"git_sha": "345b60fff6a192d55c2a220ae413c57f29b698b7",
"installed_by": ["modules"]
},
"bcftools/filter": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "1a2aa4aaf1916cca388cf27c7a6d8238bb5ad68b",
"installed_by": ["modules"]
},
"bedgovcf": {
"branch": "master",
"git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "1c46359c837ef768b004519f535c30378e8289fc",
"installed_by": ["modules"]
},
"delly/call": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"ensemblvep/download": {
"branch": "master",
"git_sha": "f50d3c606dbc7e5af367cce070d824b796872ed2",
"installed_by": ["modules"]
},
"ensemblvep/vep": {
"branch": "master",
"git_sha": "f50d3c606dbc7e5af367cce070d824b796872ed2",
"installed_by": ["modules"]
},
"expansionhunter": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"],
"patch": "modules/nf-core/expansionhunter/expansionhunter.diff"
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "ae8cd884f895585c6799ab4eb6a2c9f44df03336",
"installed_by": ["modules"]
},
"gatk4/svannotate": {
"branch": "master",
"git_sha": "ae8cd884f895585c6799ab4eb6a2c9f44df03336",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "5ee4d69ed992c3ce81cfbbdd0bef932fcb81c75a",
"installed_by": ["modules"]
},
"jasminesv": {
"branch": "master",
"git_sha": "671cad06f043fdf5c5aae7c49890ad8ccdacbb04",
"installed_by": ["modules"]
},
"manta/convertinversion": {
"branch": "master",
"git_sha": "3485512d3930df1fcb66b5f92af639179bdfe4be",
"installed_by": ["modules"]
},
"manta/germline": {
"branch": "master",
"git_sha": "3485512d3930df1fcb66b5f92af639179bdfe4be",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "80cba9452fb1e9bb79884976fa1ca0e671949aa2",
"installed_by": ["modules"]
},
"ngsbits/samplegender": {
"branch": "master",
"git_sha": "ae8668d026462283f3bdc70ad2d6c78f8919fe68",
"installed_by": ["modules"]
},
"samtools/convert": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/convert/samtools-convert.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "9a48bce39a67e2cb34b8f125fc1d50f0ad98b616",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "9a48bce39a67e2cb34b8f125fc1d50f0ad98b616",
"installed_by": ["modules"]
},
"smoove/call": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"strvctvre/strvctvre": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"svtools/vcftobedpe": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"svync": {
"branch": "master",
"git_sha": "0fc190096fa8dcc9878cef178479f22e03f174a1",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "61846a0d757ff9c0682ba3e28ab0441afd95ad7e",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "524a7d5ef99a0cbfb4feec8bf7062eb6a531931a",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "00ee87ebb541af0008596400ce6d5f66d79d5408",
"installed_by": ["modules"]
},
"vcfanno": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"wisecondorx/convert": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"wisecondorx/predict": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "65f5e638d901a51534c68fd5c1c19e8112fb4df1",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "ff506dcada6fc826ed0c641dc2ed1e98f7345fbe",
"installed_by": ["subworkflows"]
}
}
}
}
}
}