- Add additional scripts for the Manta as part of iAnnotateSV in `iAnnotateSV/utilities/manta` * vcf_ct_edits.R (https://github.com/mskcc/ACCESS_SV/blob/master/scripts/vcf_ct_edits.R) * manta_vcf2tab.py (https://github.com/mskcc/ACCESS_SV/blob/master/scripts/manta_vcf2tab.py) * merge_vcf_tab.R (https://github.com/mskcc/ACCESS_SV/blob/master/scripts/merge_vcf_tab.R) - https://github.com/rhshah/iAnnotateSV - version: 1.1.0 - R (version: 3.5.0) requirements: * library(data.table) * library(argparse) * library(stringr) * library(vcfR) * library(dplyr) * library(memuse)
Add additional scripts for the Manta as part of iAnnotateSV in
iAnnotateSV/utilities/mantahttps://github.com/rhshah/iAnnotateSV
version: 1.1.0
R (version: 3.5.0) requirements: