omnibioai-dev-docker/.env.example at main · man4ish/omnibioai-dev-docker · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
# ==========================================================
# OmniBioAI Environment Configuration
# Copy this file to .env and fill in your values
# NEVER commit .env to git
# ==========================================================

# ── Paths (set once per machine) ─────────────────────────
MACHINE_ROOT=/home/YOUR_USER/path/to/machine
WORKSPACE_HOST=${MACHINE_ROOT}/omnibioai
WORKFLOW_BUNDLES_HOST=${MACHINE_ROOT}/omnibioai-workflow-bundles
RSTUDIO_HOST=/path/to/rstudio
SLURM_ARCH=x86_64

# ── Google Cloud ──────────────────────────────────────────
GOOGLE_CLOUD_PROJECT=your-project-id
GCLOUD_CREDENTIALS=/home/YOUR_USER/.config/gcloud/application_default_credentials.json

# ── AWS ───────────────────────────────────────────────────
# Credentials are file-mounted via ${HOME}/.aws/credentials
# No secrets needed here — uses ~/.aws/credentials directly

# ── Azure ─────────────────────────────────────────────────
AZURE_CLIENT_ID=
AZURE_CLIENT_SECRET=
AZURE_TENANT_ID=
AZURE_SUBSCRIPTION_ID=
AZURE_BATCH_ACCOUNT_URL=
AZURE_BATCH_ACCOUNT_NAME=
AZURE_BATCH_ACCOUNT_KEY=
AZURE_STORAGE_CONNECTION_STRING=

# ── Database ──────────────────────────────────────────────
MYSQL_ROOT_PASSWORD=root
MYSQL_DEFAULT_DB=omnibioai
MYSQL_HOST=mysql
MYSQL_PORT=3306
MYSQL_USER=root
OMNIBIOAI_DB_NAME=omnibioai
MODEL_REGISTRY_DB_NAME=model_registry
LIMSX_DB_NAME=limsdb

# ── Redis ─────────────────────────────────────────────────
REDIS_HOST=redis
REDIS_PORT=6379
CELERY_BROKER_URL=redis://redis:6379/1
CELERY_RESULT_BACKEND=redis://redis:6379/2

# ── Services ──────────────────────────────────────────────
TES_BASE_URL=http://tes:8081
TOOLSERVER_BASE_URL=http://toolserver:9090
MODEL_REGISTRY_BASE_URL=http://model-registry:8095
RAG_BASE_URL=http://omnibioai-rag:8090

# ── Ports ─────────────────────────────────────────────────
WORKBENCH_PORT=8000
TES_PORT=8081
LIMSX_PORT=7000
MODEL_REGISTRY_PORT=8095
CONTROL_CENTER_PORT=7070
RAG_PORT=8090
DEV_HUB_PORT=8082

# ── Local user ────────────────────────────────────────────
LOCAL_UID=1000
LOCAL_GID=1000