query name too long

[FadelBerakdar]

Hi,

I hope this great suit of tools is still supported!

I found that SimCT simulated reads names can get longer than 254 characters which is maximum query name length, this is not an issue till we try converting SAM to BAM. It would be great if SimCT can be BAM friendly

error when using samtools view to convert SAM to BAM:

[E::sam_parse1] query name too long
[W::sam_read1] Parse error at line 148116670
[main_samview] truncated file.

problematic reads:

50486975:23,35459525,+,9M2584N17M5106N11M936N13M582N14M1319N10M1664N11M1539N13M137N10M4099N7M1759N5M249N9M2230N11M575N10M;23,35467245,-,7M936N13M582N14M1319N10M1664N11M1539N13M137N10M4099N7M1759N5M249N9M2230N11M575N14M14N6M5642N3M7050N7M3085N10M:AAAAAAAAA	99	23	35459528	60	2S7=2584N17=5106N11=936N13=582N14=1319N10=1664N11=1539N13=137N10=4099N7=1759N5=249N9=2230N11=575N7=3S	=	35467246	38748	CTATTTAAGATTCCCAAACCAGATAGGAAATGGTCAGATGGATTTAGCTGTTTTGCCCTTGTATATGCAAACATTAATCATTTATGAATTTACCCATGGATTCGACAAGATAAATTTGAAGCAAGTTAGGCCGACCTTAGAATACATaTa	@BBBCFFFFFFFDHHHHHHHHJJJJJJIGIIJIJIHGEFIIGIEEFHJIIIJJJJJJJJJJJJHGIJGACGB99B9FFGIIJJJJIGIGIIIICAGIJJIJJI@:FFFDDDDDEDE<AEDBB5:<<?CCCBAAABB>B>A@CCDACC###	AS:i:3353	id:Z:ENSDARG00000116857	bt:Z:protein_coding	tm:i:1812
50486975:23,35459525,+,9M2584N17M5106N11M936N13M582N14M1319N10M1664N11M1539N13M137N10M4099N7M1759N5M249N9M2230N11M575N10M;23,35467245,-,7M936N13M582N14M1319N10M1664N11M1539N13M137N10M4099N7M1759N5M249N9M2230N11M575N14M14N6M5642N3M7050N7M3085N10M:AAAAAAAAA	147	23	35467246	60	7=936N13=582N14=1319N10=1664N11=1539N1X12=137N10=4099N7=1759N5=249N9=2230N11=575N14=14N6=5642N3=7050N7=3085N10=	=	35459528	-38748	TGGTCAGATGGATTTAGCTGTTTTGCCCTTGTATATGCAAACATTAATCATTTATtAATTTACCCATGGATTCGACAAGATAAATTTGAAGCAAGTTAGGCCGACCTTAGAATACATTTCTGAAGATAAACATGTCTGGAAGAAGCTGTG	DBBBDDDB=DDDDCEDDDDDDDDDC?AIHHHHHAAGE?@B=;HHHHHHFFFFF==)>?CDDC=CCCIJJJJJJJJIIGHF@HJJJJJJJIGIJIHE?HEIHJJJJIJJJJJJJIIFCBE@?DA@IIIIJIHHHHHHHFFFFFFFFC@@@@	AS:i:3353	id:Z:ENSDARG00000116857	bt:Z:protein_coding	tm:i:1812

Thanks ~