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Test & Lint Python

[preset] Update SpecAssay preset to v0.4.12 #7099

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Run time

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Job	Run time
ruff	11s
pytest (macos-latest, 3.14)	6m 58s
pytest (macos-latest, 3.13)	6m 49s
pytest (windows-latest, 3.13)	9m 21s
pytest (ubuntu-latest, 3.13)	7m 44s
pytest (windows-latest, 3.14)	7m 43s
pytest (ubuntu-latest, 3.14)	8m 13s
	46m 59s