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Test & Lint Python

Fix init-force-preset-desync: reapply presets/extensions on init --he… #6642

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Run time

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Job	Run time
pytest (macos-latest, 3.14)	11m 3s
ruff	11s
pytest (ubuntu-latest, 3.13)	6m 27s
pytest (ubuntu-latest, 3.14)	6m 22s
pytest (windows-latest, 3.14)	7m 36s
pytest (macos-latest, 3.13)	6m 42s
pytest (windows-latest, 3.13)	10m 30s
pytest (windows-latest, 3.13)	8m 58s
pytest (ubuntu-latest, 3.13)	6m 27s
pytest (ubuntu-latest, 3.14)	6m 22s
pytest (macos-latest, 3.13)	6m 42s
pytest (macos-latest, 3.14)	11m 3s
pytest (windows-latest, 3.14)	7m 36s
ruff	11s
	1h 36m 10s