Test & Lint Python

[bug-fix] Fix init-force-preset-desync: reapply presets/extensions on `init --here --force` #6636

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Run time

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Job	Run time
ruff	7s
pytest (ubuntu-latest, 3.14)	6m 35s
pytest (macos-latest, 3.14)	6m 8s
pytest (windows-latest, 3.14)	7m 57s
pytest (windows-latest, 3.13)	7m 55s
pytest (ubuntu-latest, 3.13)	6m 20s
pytest (macos-latest, 3.13)	9m 46s
	44m 48s