The output of python3 test_reform.py is not clean or clear. It produced 937 lines of output without summary.
A grep -b2 -i of the output for error and fail came back with two instances of this
File "../../reform.py", line 252, in index_fasta
with gzip_module.open(fasta_path, 'rt', thread=None) as f:
TypeError: open() got an unexpected keyword argument 'thread'
The output of
python3 test_reform.pyis not clean or clear. It produced 937 lines of output without summary.A
grep -b2 -iof the output for error and fail came back with two instances of this