Nextflow secrets

[genericdata]

https://www.nextflow.io/docs/latest/secrets.html

We'll create the secrets on the cluster using,

# create a new secret
nextflow secrets set tw_api_key "abcd123"

# list all secrets
nextflow secrets list

# get the value of secret FOO
nextflow secrets get tw_api_key

# delete the secret FOO
nextflow secrets delete tw_api_key

• Add the instructions to the README
• Rename/update/remove config.py.template
• Update the python scripts to use the secret, api_key = os.getenv(secret_name)