From 6260b92139a77d9bfe885c2943e1c8fd7b8959c9 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 28 Apr 2026 14:44:31 +0200 Subject: [PATCH 1/7] chore: update author email address --- man/MAEpply.Rd | 2 +- man/convert_mae_assay_to_dt.Rd | 2 +- man/validate_MAE.Rd | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/man/MAEpply.Rd b/man/MAEpply.Rd index b2253e5d..b1e3c343 100644 --- a/man/MAEpply.Rd +++ b/man/MAEpply.Rd @@ -28,6 +28,6 @@ MAEpply(mae, SummarizedExperiment::assayNames) } \author{ -Bartosz Czech \href{mailto:bartosz.czech@contractors.roche.com}{bartosz.czech@contractors.roche.com} +Bartosz Czech \href{mailto:czech.bartosz@external.gene.com}{czech.bartosz@external.gene.com} } \keyword{package_utils} diff --git a/man/convert_mae_assay_to_dt.Rd b/man/convert_mae_assay_to_dt.Rd index 9d9bbe67..3a021cb9 100644 --- a/man/convert_mae_assay_to_dt.Rd +++ b/man/convert_mae_assay_to_dt.Rd @@ -63,6 +63,6 @@ convert_mae_assay_to_dt(mae, "Metrics") flatten convert_se_assay_to_dt } \author{ -Bartosz Czech \href{mailto:bartosz.czech@contractors.roche.com}{bartosz.czech@contractors.roche.com} +Bartosz Czech \href{mailto:czech.bartosz@external.gene.com}{czech.bartosz@external.gene.com} } \keyword{convert} diff --git a/man/validate_MAE.Rd b/man/validate_MAE.Rd index 0bcd1df5..83b05e5f 100644 --- a/man/validate_MAE.Rd +++ b/man/validate_MAE.Rd @@ -30,6 +30,6 @@ validate_MAE(mae) } \author{ -Bartosz Czech \href{mailto:bartosz.czech@contractors.roche.com}{bartosz.czech@contractors.roche.com} +Bartosz Czech \href{mailto:czech.bartosz@external.gene.com}{czech.bartosz@external.gene.com} } \keyword{experiment} From bedfdadcb47be60bd8df0118ea67b46f15dde328 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 28 Apr 2026 14:44:31 +0200 Subject: [PATCH 2/7] chore: bump version and update NEWS.md --- NEWS.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/NEWS.md b/NEWS.md index fc625dbe..3b6e2d88 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,6 @@ +## gDRutils 1.9.9 - 2026-04-28 +* update author email address + ## gDRutils 1.9.8 - 2026-04-18 * migrate from `qs` to `qs2` package (`qs::qread` → `qs2::qs_read`, `qs::qsave` → `qs2::qs_save`) * update batch file extension from `.qs` to `.qs2` From 754503ef8925044c659f5326f94c7707669f6991 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 28 Apr 2026 14:59:05 +0200 Subject: [PATCH 3/7] chore: fix version bump in DESCRIPTION --- DESCRIPTION | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index fb334305..cac3ff72 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: gDRutils Type: Package Title: A package with helper functions for processing drug response data -Version: 1.9.8 -Date: 2026-04-18 +Version: 1.9.9 +Date: 2026-04-28 Authors@R: c(person("Bartosz", "Czech", role=c("aut"), comment = c(ORCID = "0000-0002-9908-3007")), person("Arkadiusz", "Gladki", role=c("cre", "aut"), email="gladki.arkadiusz@gmail.com", From b373ea493069f9587f98b525b96c5d1c2428b525 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 28 Apr 2026 15:25:47 +0200 Subject: [PATCH 4/7] chore: update author email in R source files --- R/convert_mae_se_assay_to_dt.R | 2 +- R/experiment_validators.R | 2 +- R/utils.R | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/R/convert_mae_se_assay_to_dt.R b/R/convert_mae_se_assay_to_dt.R index a294ec7e..80a5330c 100644 --- a/R/convert_mae_se_assay_to_dt.R +++ b/R/convert_mae_se_assay_to_dt.R @@ -223,7 +223,7 @@ convert_se_assay_to_dt <- function(se, #' \code{get_additional_variables} into the \code{DrugName} column. Defaults to \code{FALSE}. #' @keywords convert #' -#' @author Bartosz Czech +#' @author Bartosz Czech #' #' @return data.table representation of the data in \code{assay_name}. #' diff --git a/R/experiment_validators.R b/R/experiment_validators.R index ba83be94..08193325 100644 --- a/R/experiment_validators.R +++ b/R/experiment_validators.R @@ -145,7 +145,7 @@ validate_SE <- function(se, #' mae <- get_synthetic_data("finalMAE_small.qs2") #' validate_MAE(mae) #' -#' @author Bartosz Czech +#' @author Bartosz Czech validate_MAE <- function(mae) { # Validate the SE structure, assays and metadata, as well as dimnames of assays checkmate::assert_class(mae, "MultiAssayExperiment") diff --git a/R/utils.R b/R/utils.R index 1720705a..b39cd8e7 100644 --- a/R/utils.R +++ b/R/utils.R @@ -100,7 +100,7 @@ assert_choices <- function(x, choices, ...) { #' @keywords package_utils #' @export #' -#' @author Bartosz Czech +#' @author Bartosz Czech #' #' @return list or vector depends on unify param #' From 8633624cccb7a5af1b6a6b4400dac5e3f8ef607d Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Wed, 29 Apr 2026 11:30:01 +0200 Subject: [PATCH 5/7] chore: trigger CI From 889cf15d7277fcd02ed8e1b824e5076a025eed79 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 5 May 2026 11:52:44 +0200 Subject: [PATCH 6/7] chore: trigger CI From 1eb4b9b0a19cd2b845eb73870dd1b820390111c4 Mon Sep 17 00:00:00 2001 From: Bartek Czech Date: Tue, 5 May 2026 13:39:24 +0200 Subject: [PATCH 7/7] chore: trigger CI