diff --git a/README.md b/README.md index f369f82..2a4d695 100644 --- a/README.md +++ b/README.md @@ -19,6 +19,14 @@ git clone https://github.com/emdann/milopy.git cd milopy pip install . ``` +for conda users who have trouble installing with `pip install .` (An R instance needs to co-exist in the same environment). +```bash +conda install conda-forge::r-base +git clone https://github.com/emdann/milopy.git +cd milopy +pip install . +``` + ## Tutorial @@ -31,6 +39,18 @@ pip install . import scanpy as sc import numpy as np +import milopy +import milopy.core as milo +``` +for conda users (The R root needs to be explicitly called to the running .ipynb session). +```python +import scanpy as sc +import numpy as np + +import os +import sys +os.environ['R_HOME'] = sys.prefix + "\\lib\\R" + import milopy import milopy.core as milo ```