kProcessor interface

[shokrof]

kDataFrame.hpp:
create an interface for all the public functions
classes:

1. kDataframeIterator(not _kDataframeIterator)
2. kDataframe
3. dbgIterator
4. kDataframeMQF-MAP-PHMAP

Algorithms.hpp:

1. parseSequences(allversions)
2. countKmersFromFile and string
   3)load KMC
3. transform and transform in place
4. filter 2 versions
5. aggregate 2 versions
6. merge
7. union and intersect and Diff
8. you decide about the kmerdecocer fns
9. index and index mega and index priorityqueue
10. inner join

defaultColumn.hpp:

1. Column
2. vectorColumn: it is a template make a version for int,bool,double,uint32_t
3. mixVectors
   4)QueryColorColumn
4. prefixtrie
5. dedupicated column it a template make a version for:
   a) deduplicatedColumn<vector<uint32_t>, mixVectors>
   b) deduplicatedColumn<vector<uint32_t>, prefixTrie>
   c) deduplicatedColumn<vector<uint32_t>, insertColorColumn>

[mr-eyes]

Please note that functions with anonymous functions as input can't be wrapped like:

• aggregate
• filter
• merge
• transform

There's a file called extend_algorithms that we can add custom versions of the functions in it with unique names. The currently implemented functions in that file are extracted from the kDifferentialExpression usecase.

[shokrof]

I want to make sure that I understand correctly! you finished the wrapper for those functions but it cant take python lambda functions and has to use functions from extend algorithms.

[mr-eyes]

Yes, passing lambda function in Python wrapper isn't supported.

…

On Sun, Aug 29, 2021, 1:35 PM Mostafa Shokrof ***@***.***> wrote: I want to make sure that I understand correctly! you finished the wrapper for those functions but it cant take python lambda functions and has to use functions from extend algorithms. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#86 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABWVPKDMGPMI6D3GJIYAK63T7ILQXANCNFSM5CEO2JEA> .