Currently small variants are supported as gk.Variant(chrom, position, position, ref, alt, reference_genome).
There are large variants in the human genome (i.e. thousands of bps):
- Copy number variants
- Deletions
- Insertions
- Translocations (this might be the trickiest since it's inter-chromosomal)
- Inversions on the same chromosome
It would be great to support these types of variants and be able to call genome.dna(interval) - but I realize this would be very difficult in terms of coordinates.
requested by @helen-zhu
Currently small variants are supported as gk.Variant(chrom, position, position, ref, alt, reference_genome).
There are large variants in the human genome (i.e. thousands of bps):
It would be great to support these types of variants and be able to call genome.dna(interval) - but I realize this would be very difficult in terms of coordinates.
requested by @helen-zhu