some bug

[anyone1985]

python annotate_bedpe.py breakdancer.bedpe 100 breakdancer_anno/ test repeatmasker.bed
analyzing bedpe file: breakdancer.bedpe
TOTAL ALL 373090
TRANSLOCATIONS ALL 875
TRANSLOCATIONS NON_DUPLICATE 845
TRANSLOCATIONS TOTAL_STRINGENT 845
TRANSLOCATIONS TOTAL_STRINGENT_MINUS_VERY_SHORT 844
TRANSLOCATIONS STRINGENT_VERY_SHORT 1
TRANSLOCATIONS STRINGENT_SHORT 0
TRANSLOCATIONS TOTAL_STRINGENT 844
TRANSLOCATIONS STRINGENT_LOW_SCORE 591
TRANSLOCATIONS STRINGENT_HIGH_SCORE 253
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS ALL 99
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS NON_DUPLICATE 99
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS TOTAL_STRINGENT 99
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS TOTAL_STRINGENT_MINUS_VERY_SHORT 99
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS STRINGENT_VERY_SHORT 0
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS STRINGENT_SHORT 0
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS TOTAL_STRINGENT 99
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS STRINGENT_LOW_SCORE 67
TRANSLOCATIONS-POSSIBLE_TE_INSERTIONS STRINGENT_HIGH_SCORE 32
DELETIONS ALL 0
Traceback (most recent call last):
File "annotate_bedpe.py", line 345, in
possible_te_reference_insertions = long_indel_intra_calls.pair_to_bed(tes, type="ispan", f=.75).saveas()
File "/prostate/tools/local/lib/python2.7/site-packages/pybedtools/bedtool.py", line 806, in decorated
result = method(self, *args, **kwargs)
File "/prostate/tools/local/lib/python2.7/site-packages/pybedtools/bedtool.py", line 337, in wrapped
decode_output=decode_output,
File "/home/dragon/prostate/tools/local/lib/python2.7/site-packages/pybedtools/helpers.py", line 356, in call_bedtools
raise BEDToolsError(subprocess.list2cmdline(cmds), stderr)
pybedtools.helpers.BEDToolsError:
Command was:

    bedtools pairtobed -type ispan -f 0.75 -b repeatmasker.bed -a /tmp/pybedtools.1AUFEK.tmp

Error message was:
Error: The requested bed file (/tmp/pybedtools.1AUFEK.tmp) could not be opened. Exiting!