Fixed phase 6

Another complete parameter sweep, but with directed reproduction

Author: StormKoper

docs/experiments.md

@@ -32,7 +32,7 @@ These phases should be completed sequentially, deepening our understanding at ea
 	- Look for critical slowing down: perturbations to states closer to the critical point should more slowly return to the steady state
 	- This requires time series data
 ### Phase 6: model extensions
-- Investigate whether hydra effect and SOC still occur with diffusion and directed movement
+- Investigate whether hydra effect and SOC still occur with diffusion and directed reproduction
 
 # Todo
 The main functionality is all complete. Thus, the models folder should be relatively untouched.

models/config.py

@@ -263,20 +263,16 @@ def estimate_runtime(self, n_cores: int = 32) -> str:
     timeseries_subsample=1,  # Full resolution for autocorrelation
 )
 
-# Phase 6: Model extensions (directed hunting); same config as phase 1 but with directed hunting
+# Phase 6: Model extensions (directed reproduction); same config as phase 4 but with directed reproduction
 PHASE6_CONFIG = Config(
-    grid_size=1000,
-    n_prey_death=20,
-    prey_birth=0.2,
-    prey_death_range=(0.09, 0.12),
-    predator_birth=0.8,    
-    predator_death=0.05,    
-    n_replicates=30,
-    warmup_steps=1000,
-    measurement_steps=1000,
-    collect_pcf=True,
-    pcf_sample_rate=0.2,
-    save_timeseries=False,
+    grid_size=250,
+    n_replicates=10,
+    warmup_steps=500,
+    measurement_steps=500,
+    with_evolution=False,
+    collect_pcf=False,
+    save_timeseries=True,
+    timeseries_subsample=10,
     directed_hunting=True,
 )