added update outline. will be done by the end of the day

Author: codegithubka

docs/kimon_updates.md

@@ -0,0 +1,12 @@
+## Refactoring and Optimization Update
+
+### CA Class
+
+
+### Numba Optimization
+
+
+### HPC Script Functionality
+
+
+### Tests

scripts/numba_optimized.py

@@ -48,11 +48,6 @@ def prange(*args):
 def set_numba_seed(seed: int) -> None:
     """
     Seed Numba's internal RNG from within a JIT context.
-    
-    IMPORTANT: This must be called to get reproducible results from 
-    Numba-accelerated functions. Calling np.random.seed() from Python
-    only affects NumPy's RNG, not Numba's internal Xoshiro128++ RNG.
-    
     Args:
         seed: Integer seed value
     """

scripts/pp_analysis.py

@@ -18,7 +18,7 @@
     python pp_analysis.py --mode fss           # Only finite-size scaling
     python pp_analysis.py --mode plot          # Only generate plots from saved data
     python pp_analysis.py --mode debug         # Interactive visualization (local only)
-    python pp_analysis.py --dry-run            # Estimate runtime without running
+    python scripts/pp_analysis.py --dry-run            # Estimate runtime without running
 """
 
 import argparse

scripts/visualize_pp_evolution.py

@@ -3,8 +3,8 @@
 Creates a 250x250 grid, enables per-cell evolution for `prey_death`, and
 visualizes the grid every 5 iterations while running for 2500 steps.
 """
-from models.CA import PP
 
+from models.CA import PP
 
 def main():
     params = {