Merge pull request #14 from codegithubka/kimon

Kimon

Author: codegithubka

benchmarks/benchmark.txt

@@ -362,4 +362,9 @@ For parallel simulations, use different seeds per worker (e.g., base_seed + work
 7. Use the attached legacy simulation function to compute benchmarking resukts for our optimization. Include functionality to save in a csv and plots showing the most significant results. Include flags to run with or without plots and csv output.
 
 
-8. Write a few run mock tests for the analysis file to see that the plots render properly.
+8. Write a few run mock tests for the analysis file to see that the plots render properly.
+
+
+## Refactoring Main Experiment Script
+
+Help me create a skeletal version of the updated experiments script for HPC that meets tha phase requirements outlined. The config class has been migrated to config.py. 

benchmarks/benchmark_plots.png

@@ -297,6 +297,20 @@ NOTE:
 Warmup and Measurement time must be scaled according to grid size. We need to write a method to estimate the approximate simulaiton time required. (Sary is working on that.)
 
 
+## Updates (25/1)
+
+
+Refactored ```experiments.py``` according to ```experiments.md```. Phase 4 and Phase 6 of the implementation are still unclear to me:
+
+- Phase 4: We are currently varying ```predator_birth``` and ```predator_birth``` only.
+
+- Phase 6: Will implement if all the other phases pass successfully.
+
+TODO: We need to start drafting a proper version of the analyis (```analysis.py```) for postprocessing of all the data we are currenlty collecting and plotting utilities to visualize them.
+
+
+
+
 
 
 

benchmarks/simulation_profile.txt

@@ -15,7 +15,6 @@
 sys.path.insert(0, str(Path(__file__).parent.parent))
 
 from models.numba_optimized import PPKernel, set_numba_seed
-from models.cluster_analysis import ClusterAnalyzer
 
 # Module logger
 logger = logging.getLogger(__name__)