Variable referenced before assignment

[FerriolCalvet]

When running oncodrive3d within deepCSA a user run into this error:

2026-05-21 13:38:46,347 - INFO    | oncodrive3d.run.clustering - Computing missense mut probabilities using mutabilities..
2026-05-21 13:38:46,352 - CRITICAL | root - Traceback (most recent call last):
  File "/usr/local/bin/oncodrive3D", line 8, in <module>
    sys.exit(oncodrive3D())
  File "/usr/local/lib/python3.10/site-packages/click/core.py", line 1161, in __call__
    return self.main(*args, **kwargs)
  File "/usr/local/lib/python3.10/site-packages/click/core.py", line 1082, in main
    rv = self.invoke(ctx)
  File "/usr/local/lib/python3.10/site-packages/click/core.py", line 1697, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/local/lib/python3.10/site-packages/click/core.py", line 1443, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/local/lib/python3.10/site-packages/click/core.py", line 788, in invoke
    return __callback(*args, **kwargs)
  File "/usr/local/lib/python3.10/site-packages/scripts/globals.py", line 46, in wrapper
    return func(*args, **kwargs)
  File "/usr/local/lib/python3.10/site-packages/scripts/main.py", line 204, in run
    run_clustering(input_path,
  File "/usr/local/lib/python3.10/site-packages/scripts/run/clustering.py", line 672, in run_clustering
    result_gene = result_np_gene
UnboundLocalError: local variable 'result_np_gene' referenced before assignment

This was run with this version:

$ oncodrive3d --version
oncodrive3d, version 1.0.5