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1129 lines (1129 loc) · 68 KB
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{
"2024": [
{
"title": "MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT Images",
"authors": [
"Yanwu Xu",
"Li Sun",
"Wei Peng",
"Shuyue Jia",
"Katelyn Morrison",
"Adam Perer",
"Afrooz Zandifar",
"Shyam Visweswaran",
"Motahhare Eslami",
"Kayhan Batmanghelich"
],
"paper_link": "https://ieeexplore.ieee.org/document/10566053",
"code_link": "https://github.com/batmanlab/MedSyn",
"preprint_link": "https://arxiv.org/abs/2310.03559",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/10/Screenshot-2024-10-17-at-10.39.24%E2%80%AFPM-600x178.png",
"bibtex": "@article{xu2024medsyn,\n title={MedSyn: text-guided anatomy-aware synthesis of high-fidelity 3-D CT images},\n author={Xu, Yanwu and Sun, Li and Peng, Wei and Jia, Shuyue and Morrison, Katelyn and Perer, Adam and Zandifar, Afrooz and Visweswaran, Shyam and Eslami, Motahhare and Batmanghelich, Kayhan},\n journal={IEEE Transactions on Medical Imaging},\n volume={43},\n number={10},\n pages={3648--3660},\n year={2024},\n publisher={IEEE}\n}",
"venue": "IEEE Transactions on Medical Imaging"
},
{
"title": "Mammo-CLIP: A Vision Language Foundation Model to Enhance Data Efficiency and Robustness in Mammography",
"authors": [
"Shantanu Ghosh",
"Clare B Poynton",
"Shyam Visweswaran",
"Kayhan Batmanghelich"
],
"paper_link": "https://papers.miccai.org/miccai-2024/488-Paper0926.html",
"code_link": "https://github.com/batmanlab/Mammo-CLIP",
"preprint_link": "https://arxiv.org/abs/2405.12255",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/10/Screenshot-2024-10-17-at-10.43.25%E2%80%AFPM-600x435.png",
"bibtex": "@inproceedings{ghosh2024mammo,\n title={Mammo-clip: A vision language foundation model to enhance data efficiency and robustness in mammography},\n author={Ghosh, Shantanu and Poynton, Clare B and Visweswaran, Shyam and Batmanghelich, Kayhan},\n booktitle={International conference on medical image computing and computer-assisted intervention},\n pages={632--642},\n year={2024},\n organization={Springer Nature Switzerland Cham}\n}",
"venue": "International conference on medical image computing and computer-assisted intervention"
},
{
"title": "Anatomy-specific Progression Classification in Chest Radiographs via Weakly Supervised Learning",
"authors": [
"Ke Yu",
"Shantanu Ghosh",
"Zhexiong Liu",
"Christopher Deible",
"Clare B Poynton",
"Kayhan Batmanghelich"
],
"paper_link": "https://pubs.rsna.org/doi/10.1148/ryai.230277",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/10/Screenshot-2024-10-17-at-10.59.40%E2%80%AFPM-600x230.png",
"bibtex": "@article{yu2024anatomy,\n title={Anatomy-specific Progression Classification in Chest Radiographs via Weakly Supervised Learning},\n author={Yu, Ke and Ghosh, Shantanu and Liu, Zhexiong and Deible, Christopher and Poynton, Clare B and Batmanghelich, Kayhan},\n journal={Radiology: Artificial Intelligence},\n volume={6},\n number={5},\n pages={e230277},\n year={2024},\n publisher={Radiological Society of North America}\n}",
"venue": "Radiology: Artificial Intelligence"
}
],
"2023": [
{
"title": "Semi-Implicit Denoising Diffusion Models (SIDDMs)",
"authors": [
"Mingming Gong",
"Shaoan Xie",
"Wei Wei",
"Matthias Grundmann",
"Kayhan Batmanghelich",
"Tingbo Hou",
"others"
],
"paper_link": "https://openreview.net/attachment?id=xxxx",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/01/Screenshot-2024-01-07-at-3.47.53%E2%80%AFPM-300x92.png",
"bibtex": "@inproceedings{gong2023semi,\n title={Semi-implicit denoising diffusion models (siddms)},\n author={Gong, Mingming and Xie, Shaoan and Wei, Wei and Grundmann, Matthias and Batmanghelich, Kayhan and Hou, Tingbo and others},\n booktitle={Advances in Neural Information Processing Systems},\n volume={36},\n pages={17383--17394},\n year={2023}\n}",
"venue": "Advances in Neural Information Processing Systems"
},
{
"title": "DrasCLR: Self-Supervised Representation Learning via Disentangled Representations and Spectral Clustering",
"authors": [
"Li Sun",
"Ke Yu",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2301.04700",
"code_link": "https://github.com/batmanlab/DrasCLR",
"preprint_link": "https://arxiv.org/abs/2301.04700",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/01/Screenshot-2024-01-07-at-2.49.14%E2%80%AFPM-600x467.png",
"bibtex": "@inproceedings{sun2021context,\n title={Context matters: Graph-based self-supervised representation learning for medical images},\n author={Sun, Li and Yu, Ke and Batmanghelich, Kayhan},\n booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},\n volume={35},\n number={6},\n pages={4874--4882},\n year={2021}\n}\n",
"venue": "Proceedings of the AAAI Conference on Artificial Intelligence"
},
{
"title": "Beyond Distribution Shift: Spurious Features Through the Lens of Training Dynamics",
"authors": [
"Nihal Murali",
"Aahlad Puli",
"Ke Yu",
"Rajesh Ranganath",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2301.06700",
"code_link": "https://github.com/batmanlab/SpuriousFeaturesTrainingDynamics",
"preprint_link": "https://arxiv.org/abs/2301.06700",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2023/10/kmnist_expts-300x161.jpg",
"bibtex": "@article{murali2023beyond,\n title={Beyond distribution shift: Spurious features through the lens of training dynamics},\n author={Murali, Nihal and Puli, Aahlad and Yu, Ke and Ranganath, Rajesh and Batmanghelich, Kayhan},\n journal={Transactions on machine learning research},\n volume={2023},\n pages={https--openreview},\n year={2023}\n}",
"venue": "Transactions on machine learning research"
},
{
"title": "ComBat Harmonization: Empirical Bayes versus fully Bayes approaches",
"authors": [
"Maxwell Reynolds",
"Tigmanshu Chaudhary",
"Mahbaneh Eshaghzadeh Torbati",
"Dana L Tudorascu",
"Kayhan Batmanghelich",
"Alzheimer's Disease Neuroimaging Initiative",
"others"
],
"paper_link": "https://arxiv.org/abs/2304.03222",
"code_link": "https://github.com/batmanlab/ComBat-Harmonization",
"preprint_link": "https://arxiv.org/abs/2304.03222",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2024/01/Screenshot-2024-01-07-at-3.12.49%E2%80%AFPM-600x435.png",
"bibtex": "@article{reynolds2023combat,\n title={Combat harmonization: Empirical bayes versus fully bayes approaches},\n author={Reynolds, Maxwell and Chaudhary, Tigmanshu and Torbati, Mahbaneh Eshaghzadeh and Tudorascu, Dana L and Batmanghelich, Kayhan and Alzheimer's Disease Neuroimaging Initiative and others},\n journal={NeuroImage: Clinical},\n volume={39},\n pages={103472},\n year={2023},\n publisher={Elsevier}\n}",
"venue": "NeuroImage: Clinical"
},
{
"title": "Distilling Blackbox to Interpretable Models for Efficient Transfer Learning",
"authors": [
"Shantanu Ghosh",
"Ke Yu",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2301.07877",
"code_link": "https://github.com/batmanlab/DistillBlackbox",
"preprint_link": "https://arxiv.org/abs/2301.07877",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2023/10/Screenshot-2023-10-10-at-11.31.06%E2%80%AFPM-300x159.png",
"bibtex": "@inproceedings{ghosh2023distilling,\n title={Distilling blackbox to interpretable models for efficient transfer learning},\n author={Ghosh, Shantanu and Yu, Ke and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={628--638},\n year={2023},\n organization={Springer Nature Switzerland Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Physics-Informed Neural Networks for Tissue Elasticity Reconstruction in Magnetic Resonance Elastography",
"authors": [
"Matthew Ragoza",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2301.08322",
"code_link": "https://github.com/batmanlab/PhysicsInformedMRE",
"preprint_link": "https://arxiv.org/abs/2301.08322",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2023/10/Screenshot-2023-10-10-at-11.45.54%E2%80%AFPM-300x96.png",
"bibtex": "@inproceedings{ragoza2023physics,\n title={Physics-informed neural networks for tissue elasticity reconstruction in magnetic resonance elastography},\n author={Ragoza, Matthew and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={333--343},\n year={2023},\n organization={Springer Nature Switzerland Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Deep Learning Integration of Chest CT Imaging and Gene Expression Identifies Novel Aspects of COPD",
"authors": [
"Junxiang Chen",
"Zhonghui Xu",
"Li Sun",
"Ke Yu",
"Craig P Hersh",
"Adel Boueiz",
"John E Hokanson",
"Frank C Sciurba",
"Edwin K Silverman",
"Peter J Castaldi",
"others"
],
"paper_link": "https://pubmed.ncbi.nlm.nih.gov/37325541/",
"code_link": "https://github.com/batmanlab/CTGeneExpression",
"preprint_link": "https://arxiv.org/abs/2302.12345",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2023/06/Screenshot-2023-06-27-at-12.55.23-AM-300x133.png",
"bibtex": "@article{chen2023deep,\n title={Deep learning integration of chest computed tomography imaging and gene expression identifies novel aspects of copd},\n author={Chen, Junxiang and Xu, Zhonghui and Sun, Li and Yu, Ke and Hersh, Craig P and Boueiz, Adel and Hokanson, John E and Sciurba, Frank C and Silverman, Edwin K and Castaldi, Peter J and others},\n journal={Chronic Obstructive Pulmonary Diseases: Journal of the COPD Foundation},\n volume={10},\n number={4},\n pages={355},\n year={2023}\n}",
"venue": "Chronic Obstructive Pulmonary Diseases: Journal of the COPD Foundation"
},
{
"title": "Dividing and Conquering a BlackBox to a Mixture of Interpretable Models: Route, Interpret, Repeat",
"authors": [
"Shantanu Ghosh",
"Ke Yu",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2303.10011",
"code_link": "https://github.com/batmanlab/MixtureOfInterpretableModels",
"preprint_link": "https://arxiv.org/abs/2303.10011",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2023/06/Screenshot-2023-06-27-at-12.33.26-AM-300x158.png",
"bibtex": "@inproceedings{ghosh2023distilling,\n title={Distilling blackbox to interpretable models for efficient transfer learning},\n author={Ghosh, Shantanu and Yu, Ke and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={628--638},\n year={2023},\n organization={Springer Nature Switzerland Cham}\n}\n",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Augmentation by Counterfactual Explanation — Fixing an Overconfident Classifier",
"authors": [
"Sumedha Singla",
"Nihal Murali",
"Forough Arabshahi",
"Sofia Triantafyllou",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/abs/2305.03022",
"code_link": "https://github.com/batmanlab/CounterfactualExplanation",
"preprint_link": "https://arxiv.org/abs/2305.03022",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/11/Screenshot-2022-11-06-at-8.34.02-PM-300x114.png",
"bibtex": "@inproceedings{singla2023augmentation,\n title={Augmentation by counterfactual explanation-fixing an overconfident classifier},\n author={Singla, Sumedha and Murali, Nihal and Arabshahi, Forough and Triantafyllou, Sofia and Batmanghelich, Kayhan},\n booktitle={Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision},\n pages={4720--4730},\n year={2023}\n}",
"venue": "Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision"
},
{
"title": "Explaining the Black-box Smoothly – A Counterfactual Approach",
"authors": [
"Sumedha Singla",
"Motahhare Eslami",
"Brian Pollack",
"Stephen Wallace",
"Kayhan Batmanghelich"
],
"paper_link": "https://www.sciencedirect.com/science/article/pii/Sxxx",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/10/Screen-Shot-2022-10-13-at-12.24.43-AM-283x300.png",
"bibtex": "@article{singla2023explaining,\n title={Explaining the black-box smoothly—a counterfactual approach},\n author={Singla, Sumedha and Eslami, Motahhare and Pollack, Brian and Wallace, Stephen and Batmanghelich, Kayhan},\n journal={Medical Image Analysis},\n volume={84},\n pages={102721},\n year={2023},\n publisher={Elsevier}\n}",
"venue": "Medical Image Analysis"
}
],
"2022": [
{
"title": "Automated Detection of Premalignant Oral Lesions on Whole Slide Images Using CNN",
"authors": [
"Yingci Liu",
"Elizabeth Bilodeau",
"Brian Pollack",
"Kayhan Batmanghelich"
],
"paper_link": "https://pubmed.ncbi.nlm.nih.gov/xxxx",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/oral-lesions-icon-300x186.png",
"bibtex": "@article{liu2022automated,\n title={Automated detection of premalignant oral lesions on whole slide images using convolutional neural networks},\n author={Liu, Yingci and Bilodeau, Elizabeth and Pollack, Brian and Batmanghelich, Kayhan},\n journal={Oral Oncology},\n volume={134},\n pages={106109},\n year={2022},\n publisher={Pergamon}\n}",
"venue": "Oral Oncology"
},
{
"title": "Anatomy-Guided Weakly-Supervised Abnormality Localization in Chest X-rays",
"authors": [
"Ke Yu",
"Shantanu Ghosh",
"Zhexiong Liu",
"Christopher Deible",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2206.12704.pdf",
"code_link": "https://github.com/batmanlab/AGXNet",
"preprint_link": "https://arxiv.org/abs/2206.12704",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/AGXNet-icon-300x167.png",
"bibtex": "@inproceedings{yu2022anatomy,\n title={Anatomy-guided weakly-supervised abnormality localization in chest x-rays},\n author={Yu, Ke and Ghosh, Shantanu and Liu, Zhexiong and Deible, Christopher and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={658--668},\n year={2022},\n organization={Springer Nature Switzerland Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Adversarial Consistency for Single Domain Generalization in Medical Image Segmentation",
"authors": [
"Yanwu Xu",
"Shaoan Xie",
"Maxwell Reynolds",
"Matthew Ragoza",
"Mingming Gong",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2206.13737.pdf",
"code_link": "https://github.com/batmanlab/Adversarial-Single-Domain-Generalization",
"preprint_link": "https://arxiv.org/abs/2206.13737",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/adv-consistency-icon-300x167.png",
"bibtex": "@inproceedings{xu2022adversarial,\n title={Adversarial consistency for single domain generalization in medical image segmentation},\n author={Xu, Yanwu and Xie, Shaoan and Reynolds, Maxwell and Ragoza, Matthew and Gong, Mingming and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={671--681},\n year={2022},\n organization={Springer Nature Switzerland Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Hierarchical Amortized Training for Memory-efficient High-Resolution 3D GAN",
"authors": [
"Li Sun",
"Junxiang Chen",
"Yanwu Xu",
"Mingming Gong",
"Ke Yu",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2207.01234.pdf",
"code_link": "https://github.com/batmanlab/HierarchicalAmortized3DGAN",
"preprint_link": "https://arxiv.org/abs/2207.01234",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/hierarchical-gan-icon-300x186.png",
"bibtex": "@article{sun2022hierarchical,\n title={Hierarchical amortized GAN for 3D high resolution medical image synthesis},\n author={Sun, Li and Chen, Junxiang and Xu, Yanwu and Gong, Mingming and Yu, Ke and Batmanghelich, Kayhan},\n journal={IEEE journal of biomedical and health informatics},\n volume={26},\n number={8},\n pages={3966--3975},\n year={2022},\n publisher={IEEE}\n}\n",
"venue": "IEEE journal of biomedical and health informatics"
},
{
"title": "Maximum Spatial Perturbation Consistency for Unpaired Image-to-Image Translation",
"authors": [
"Yanwu Xu",
"Shaoan Xie",
"Wenhao Wu",
"Kun Zhang",
"Mingming Gong",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2207.08999.pdf",
"code_link": "https://github.com/batmanlab/MaxSpatialPerturbationConsistency",
"preprint_link": "https://arxiv.org/abs/2207.08999",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/max-spatial-perturbation-icon-300x186.png",
"bibtex": "@inproceedings{xu2022maximum,\n title={Maximum spatial perturbation consistency for unpaired image-to-image translation},\n author={Xu, Yanwu and Xie, Shaoan and Wu, Wenhao and Zhang, Kun and Gong, Mingming and Batmanghelich, Kayhan},\n booktitle={Proceedings of the IEEE/CVF conference on computer vision and pattern recognition},\n pages={18311--18320},\n year={2022}\n}",
"venue": "Proceedings of the IEEE/CVF conference on computer vision and pattern recognition"
},
{
"title": "Knowledge Distillation via Constrained Variational Inference",
"authors": [
"Ardavan Saeedi",
"Yuria Utsumi",
"Li Sun",
"Kayhan Batmanghelich",
"Li-wei Lehman"
],
"paper_link": "https://arxiv.org/pdf/2208.12345.pdf",
"code_link": null,
"preprint_link": "https://arxiv.org/abs/2208.12345",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2022/05/knowledge-distillation-icon-300x186.png",
"bibtex": "@inproceedings{saeedi2022knowledge,\n title={Knowledge distillation via constrained variational inference},\n author={Saeedi, Ardavan and Utsumi, Yuria and Sun, Li and Batmanghelich, Kayhan and Lehman, Li-wei},\n booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},\n volume={36},\n number={7},\n pages={8132--8140},\n year={2022}\n}",
"venue": "Proceedings of the AAAI Conference on Artificial Intelligence"
}
],
"2021": [
{
"title": "Can Contrastive Learning Avoid Shortcut Solutions?",
"authors": [
"Joshua Robinson",
"Li Sun",
"Ke Yu",
"Kayhan Batmanghelich",
"Stefanie Jegelka",
"Suvrit Sra"
],
"paper_link": "https://arxiv.org/pdf/2106.11230.pdf",
"code_link": "https://github.com/joshr17/IFM",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2021/10/Screen-Shot-2021-10-03-at-8.11.25-PM-300x82.png",
"bibtex": "@inproceedings{robinson2021can,\n title={Can contrastive learning avoid shortcut solutions?},\n author={Robinson, Joshua and Sun, Li and Yu, Ke and Batmanghelich, Kayhan and Jegelka, Stefanie and Sra, Suvrit},\n journal={Advances in neural information processing systems},\n volume={34},\n pages={4974--4986},\n year={2021}\n}",
"venue": "Advances in neural information processing systems"
},
{
"title": "Deep Learning Prediction of Voxel-Level Liver Stiffness in Patients with Nonalcoholic Fatty Liver Disease",
"authors": [
"Brian L Pollack",
"Kayhan Batmanghelich",
"Stephen S Cai",
"Emile Gordon",
"Stephen Wallace",
"Roberta Catania",
"Carlos Morillo-Hernandez",
"Alessandro Furlan",
"Amir A Borhani"
],
"paper_link": "https://pubs.rsna.org/doi/10.1148/ryai.2021200274",
"code_link": "https://github.com/batmanlab/vessel-flow-consistency-ssl",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2021/09/RadAI-300x186.png",
"bibtex": "@article{pollack2021deep,\n title={Deep learning prediction of voxel-level liver stiffness in patients with nonalcoholic fatty liver disease},\n author={Pollack, Brian L and Batmanghelich, Kayhan and Cai, Stephen S and Gordon, Emile and Wallace, Stephen and Catania, Roberta and Morillo-Hernandez, Carlos and Furlan, Alessandro and Borhani, Amir A},\n journal={Radiology: Artificial Intelligence},\n volume={3},\n number={6},\n pages={e200274},\n year={2021},\n publisher={Radiological Society of North America}\n}",
"venue": "Radiology: Artificial Intelligence"
},
{
"title": "Self-Supervised Vessel Enhancement Using Flow-Based Consistencies",
"authors": [
"Rohit Jena",
"Sumedha Singla",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2101.05145.pdf",
"code_link": "https://github.com/batmanlab/vessel-flow-consistency-ssl",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2021/07/Rohit-ssl-300x167.png",
"bibtex": "@inproceedings{jena2021self,\n title={Self-supervised vessel enhancement using flow-based consistencies},\n author={Jena, Rohit and Singla, Sumedha and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={242--251},\n year={2021},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Using Causal Analysis for Conceptual Deep Learning Explanation",
"authors": [
"Sumedha Singla",
"Stephen Wallace",
"Sofia Triantafillou",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2107.06098.pdf",
"code_link": "https://github.com/sumedhasingla/ExplainingBBSmoothly",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2021/07/SumedhaCausalBBX-300x145.png",
"bibtex": "@inproceedings{singla2021using,\n title={Using causal analysis for conceptual deep learning explanation},\n author={Singla, Sumedha and Wallace, Stephen and Triantafillou, Sofia and Batmanghelich, Kayhan},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={519--528},\n year={2021},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "Empowering Variational Inference with Predictive Features: Application to Disease Subtyping",
"authors": [
"A. Saeedi",
"P. Yadollahpour",
"S. Singla",
"W. Wells",
"F. Sciurba",
"Kayhan Batmanghelich"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2021/07/MLHC21.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2021/07/MLHC21-300x133.png",
"bibtex": null,
"venue": ""
},
{
"title": "Improving Clinical Disease Sub-typing and Future Events Prediction through a Chest CT based Deep Learning Approach",
"authors": [
"Sumedha Singla",
"Mingming Gong",
"Craig Riley",
"Frank Sciurba",
"Kayhan Batmanghelich"
],
"paper_link": "https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.14673",
"code_link": "https://github.com/batmanlab/Subject2Vec",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/12/Screen-Shot-2020-12-29-at-1.13.39-PM-300x154.png",
"bibtex": "@article{singla2021improving,\n title={Improving clinical disease subtyping and future events prediction through a chest CT-based deep learning approach},\n author={Singla, Sumedha and Gong, Mingming and Riley, Craig and Sciurba, Frank and Batmanghelich, Kayhan},\n journal={Medical physics},\n volume={48},\n number={3},\n pages={1168--1181},\n year={2021}\n}",
"venue": "Medical physics"
},
{
"title": "Context Matters: Graph-based Self-supervised Representation Learning for Medical Images",
"authors": [
"Li Sun",
"Ke Yu",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2012.06457.pdf",
"code_link": "https://github.com/batmanlab/Context_Aware_SSL",
"preprint_link": "https://arxiv.org/abs/2012.06457",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/12/Screen-Shot-2020-12-29-at-12.38.09-PM-300x146.png",
"bibtex": "@inproceedings{sun2021context,\n title={Context matters: Graph-based self-supervised representation learning for medical images},\n author={Sun, Li and Yu, Ke and Batmanghelich, Kayhan},\n booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},\n volume={35},\n number={6},\n pages={4874--4882},\n year={2021}\n}",
"venue": "Proceedings of the AAAI Conference on Artificial Intelligence"
}
],
"2020": [
{
"title": "Unpaired Data Empowers Association Tests",
"authors": [
"Mingming Gong",
"Peng Liu",
"Frank C Sciurba",
"Petar Stojanov",
"Dacheng Tao",
"George Tseng",
"Kun Zhang",
"Kayhan Batmanghelich"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/839159v1.full_.pdf",
"code_link": "https://github.com/batmanlab/Semi-paired-Association-Test",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/Screen-Shot-2020-07-05-at-7.52.22-PM.png",
"bibtex": "@article{gong2019unpaired,\n title={Unpaired Data Empowers Association Tests},\n author={Gong, Mingming and Liu, Peng and Sciurba, Frank C and Stojanov, Petar and Tao, Dacheng and Tseng, George and Zhang, Kun and Batmanghelich, Kayhan},\n journal={Bioinformatics},\n pages={839159},\n year={2019},\n publisher={Cold Spring Harbor Laboratory}\n}",
"venue": "Bioinformatics"
},
{
"title": "Label-Noise Robust Domain Adaptation",
"authors": [
"Xiyu Yu",
"Tongliang Liu",
"Mingming Gong",
"Kun Zhang",
"Kayhan Batmanghelich",
"Dacheng Tao"
],
"paper_link": "https://arxiv.org/pdf/2008.08174.pdf",
"code_link": "https://github.com/batmanlab/LabelNoiseRobustDA",
"preprint_link": "https://arxiv.org/abs/2008.08174",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/ICML2020-1.png",
"bibtex": "@inproceedings{yu2020label,\n title={Label-noise robust domain adaptation},\n author={Yu, Xiyu and Liu, Tongliang and Gong, Mingming and Zhang, Kun and Batmanghelich, Kayhan and Tao, Dacheng},\n booktitle={International conference on machine learning},\n pages={10913--10924},\n year={2020},\n organization={PMLR}\n}",
"venue": "International conference on machine learning"
},
{
"title": "Semi-Supervised Hierarchical Drug Embedding",
"authors": [
"Ke Yu",
"Shyam Visweswaran",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2008.01234.pdf",
"code_link": "https://github.com/batmanlab/SemiSupervisedHierarchicalDrugEmbedding",
"preprint_link": "https://arxiv.org/abs/2008.01234",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/06/drugEmbedding-e1593309413324.png",
"bibtex": "@article{yu2020semi,\n title={Semi-supervised hierarchical drug embedding in hyperbolic space},\n author={Yu, Ke and Visweswaran, Shyam and Batmanghelich, Kayhan},\n journal={Journal of chemical information and modeling},\n volume={60},\n number={12},\n pages={5647--5657},\n year={2020},\n publisher={ACS Publications}\n}",
"venue": "Journal of chemical information and modeling"
},
{
"title": "3D-BoxSup: Positive-Unlabeled Learning of Brain Tumor Segmentation Networks From 3D Bounding Boxes",
"authors": [
"Yanwu Xu",
"Mingming Gong",
"Junxiang Chen",
"Ziye Chen",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2007.08194.pdf",
"code_link": "https://github.com/batmanlab/3D-BoxSup",
"preprint_link": "https://arxiv.org/abs/2007.08194",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/06/BoxSeg.png",
"bibtex": "@article{xu20203d,\n title={3d-boxsup: Positive-unlabeled learning of brain tumor segmentation networks from 3d bounding boxes},\n author={Xu, Yanwu and Gong, Mingming and Chen, Junxiang and Chen, Ziye and Batmanghelich, Kayhan},\n journal={Frontiers in Neuroscience},\n volume={14},\n pages={350},\n year={2020},\n publisher={Frontiers Media SA}\n}",
"venue": "Frontiers in Neuroscience"
},
{
"title": "Human-Machine Collaboration for Medical Image Segmentation",
"authors": [
"Mahdyar Ravanbakhsh",
"Vadim Tschernezki",
"Felix Last",
"Tassilo Klein",
"Kayhan Batmanghelich",
"Volker Tresp",
"Moin Nabi"
],
"paper_link": "https://arxiv.org/pdf/2007.09876.pdf",
"code_link": "https://github.com/batmanlab/HumanMachineSegmentation",
"preprint_link": "https://arxiv.org/abs/2007.09876",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/06/ICASSP2020-e1593290071769.png",
"bibtex": "@inproceedings{ravanbakhsh2020human,\n title={Human-machine collaboration for medical image segmentation},\n author={Ravanbakhsh, Mahdyar and Tschernezki, Vadim and Last, Felix and Klein, Tassilo and Batmanghelich, Kayhan and Tresp, Volker and Nabi, Moin},\n booktitle={ICASSP 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},\n pages={1040--1044},\n year={2020},\n organization={IEEE}\n}",
"venue": "ICASSP 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)"
},
{
"title": "Explanation by Progressive Exaggeration",
"authors": [
"Sumedha Singla",
"Brian Pollack",
"Junxiang Chen",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2007.12345.pdf",
"code_link": "https://github.com/batmanlab/ExplanationByExaggeration",
"preprint_link": "https://arxiv.org/abs/2007.12345",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/Screenshot_1.png",
"bibtex": "@inproceedings{singla2019explanation,\n title={Explanation by Progressive Exaggeration},\n author={Singla, Sumedha and Pollack, Brian and Chen, Junxiang and Batmanghelich, Kayhan},\n booktitle={International Conference on Learning Representations},\n year={2019}\n}",
"venue": "International Conference on Learning Representations"
},
{
"title": "Generative-Discriminative Complementary Learning",
"authors": [
"Yanwu Xu",
"Mingming Gong",
"Junxiang Chen",
"Tongliang Liu",
"Kun Zhang",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2007.13567.pdf",
"code_link": "https://github.com/batmanlab/GenerativeDiscriminativeComplementaryLearning",
"preprint_link": "https://arxiv.org/abs/2007.13567",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2020_4.png",
"bibtex": "@inproceedings{xu2020generative,\n title={Generative-discriminative complementary learning},\n author={Xu, Yanwu and Gong, Mingming and Chen, Junxiang and Liu, Tongliang and Zhang, Kun and Batmanghelich, Kayhan},\n booktitle={Proceedings of the AAAI conference on artificial intelligence},\n volume={34},\n number={04},\n pages={6526--6533},\n year={2020}\n}",
"venue": "Proceedings of the AAAI conference on artificial intelligence"
},
{
"title": "Weakly Supervised Disentanglement by Pairwise Similarities",
"authors": [
"Junxiang Chen",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/2007.14567.pdf",
"code_link": "https://github.com/batmanlab/WeaklySupervisedDisentanglement",
"preprint_link": "https://arxiv.org/abs/2007.14567",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/06/weaklySprvDisentangle.png",
"bibtex": "@inproceedings{chen2020weakly,\n title={Weakly supervised disentanglement by pairwise similarities},\n author={Chen, Junxiang and Batmanghelich, Kayhan},\n booktitle={Proceedings of the AAAI Conference on Artificial Intelligence},\n volume={34},\n number={04},\n pages={3495--3502},\n year={2020}\n}",
"venue": "Proceedings of the AAAI Conference on Artificial Intelligence"
}
],
"2019": [
{
"title": "Geometry-Consistent Adversarial Networks for One-Sided Unsupervised Domain Mapping (GcGAN)",
"authors": [
"Huan Fu",
"Mingming Gong",
"Chaohui Wang",
"Kayhan Batmanghelich",
"Kun Zhang",
"Dacheng Tao"
],
"paper_link": "https://arxiv.org/pdf/1809.05852.pdf",
"code_link": "https://github.com/hufu6371/GcGAN",
"preprint_link": "https://arxiv.org/abs/1809.05852",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2019_1.png",
"bibtex": "@inproceedings{fu2019geometry,\n title={Geometry-consistent generative adversarial networks for one-sided unsupervised domain mapping},\n author={Fu, Huan and Gong, Mingming and Wang, Chaohui and Batmanghelich, Kayhan and Zhang, Kun and Tao, Dacheng},\n booktitle={Proceedings of the IEEE/CVF conference on computer vision and pattern recognition},\n pages={2427--2436},\n year={2019}\n}",
"venue": "Proceedings of the IEEE/CVF conference on computer vision and pattern recognition"
},
{
"title": "Twin Auxiliary Classifiers GAN",
"authors": [
"Mingming Gong",
"Yanwu Xu",
"Chunyuan Li",
"Kun Zhang",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/1907.02690.pdf",
"code_link": "https://github.com/batmanlab/twin-auxiliary-classifiers-gan",
"preprint_link": "https://arxiv.org/abs/1907.02690",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/GAN.png",
"bibtex": "@inproceedings{gong2019twin,\n title={Twin auxilary classifiers gan},\n author={Gong, Mingming and Xu, Yanwu and Li, Chunyuan and Zhang, Kun and Batmanghelich, Kayhan},\n booktitle={Advances in neural information processing systems},\n volume={32},\n year={2019}\n}",
"venue": "Advances in neural information processing systems"
},
{
"title": "Generative Interpretability: Application in Disease Subtyping",
"authors": [
"P. Yadollahpour",
"A. Saeedi",
"S. Singla",
"F. C. Sciurba",
"Kayhan Batmanghelich"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2020/04/main_0.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2019_3_1_r-1.png",
"bibtex": null,
"venue": ""
},
{
"title": "Robust Ordinal VAE: Employing Noisy Pairwise Comparisons for Disentanglement",
"authors": [
"Junxiang Chen",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/1910.05898.pdf",
"code_link": "https://github.com/batmanlab/VAE_pairwise",
"preprint_link": "https://arxiv.org/abs/1910.05898",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2019_4_1_r-1.png",
"bibtex": "@online{chen2019robust,\n author = {Chen, Junxiang and Batmanghelich, Kayhan},\n title = {Robust ordinal VAE: employing noisy pairwise comparisons for disentanglement},\n year = {2019},\n eprint = {1910.05898},\n eprinttype = {arXiv},\n eprintclass = {cs.LG},\n url = {https://arxiv.org/abs/1910.05898},\n note = {Preprint},\n keywords = {preprint}\n}",
"venue": ""
}
],
"2018": [
{
"title": "Subject2Vec: Generative-Discriminative Approach from a Set of Image Patches to a Vector",
"authors": [
"Sumedha Singla",
"Mingming Gong",
"Siamak Ravanbakhsh",
"Frank Sciurba",
"Barnabas Poczos",
"Kayhan N Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/1806.11217.pdf",
"code_link": "https://github.com/batmanlab/Subject2Vec",
"preprint_link": "https://arxiv.org/abs/1806.11217",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_1_r.png",
"bibtex": "@inproceedings{singla2018subject2vec,\n title={Subject2Vec: generative-discriminative approach from a set of image patches to a vector},\n author={Singla, Sumedha and Gong, Mingming and Ravanbakhsh, Siamak and Sciurba, Frank and Poczos, Barnabas and Batmanghelich, Kayhan N},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={502--510},\n year={2018},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "A structural equation model for imaging genetics using spatial transcriptomics",
"authors": [
"Sjoerd MH Huisman",
"Ahmed Mahfouz",
"Nematollah K Batmanghelich",
"Boudewijn PF Lelieveldt",
"Marcel JT Reinders",
"Alzheimer\u2019s Disease Neuroimaging Initiative"
],
"paper_link": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429169/pdf/40708_2018_Article_91.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/Screen-Shot-2020-07-05-at-7.27.30-PM.png",
"bibtex": "@article{huisman2018structural,\n title={A structural equation model for imaging genetics using spatial transcriptomics},\n author={Huisman, Sjoerd MH and Mahfouz, Ahmed and Batmanghelich, Nematollah K and Lelieveldt, Boudewijn PF and Reinders, Marcel JT and Alzheimer\u2019s Disease Neuroimaging Initiative},\n journal={Brain informatics},\n volume={5},\n number={2},\n pages={13},\n year={2018},\n publisher={Springer Berlin Heidelberg Berlin/Heidelberg}\n}",
"venue": "Brain informatics"
},
{
"title": "Causal Generative Domain Adaptation Networks",
"authors": [
"Mingming Gong",
"Kun Zhang",
"Biwei Huang",
"Clark Glymour",
"Dacheng Tao",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/1804.04333.pdf",
"code_link": null,
"preprint_link": "https://arxiv.org/abs/1804.04333",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_3_r_1.png",
"bibtex": "@online{gong2018causal,\n author = {Gong, Mingming and Zhang, Kun and Huang, Biwei and Glymour, Clark and Tao, Dacheng and Batmanghelich, Kayhan},\n title = {Causal generative domain adaptation networks},\n year = {2018},\n eprint = {1804.04333},\n eprinttype = {arXiv},\n eprintclass = {cs.LG},\n url = {https://arxiv.org/abs/1804.04333},\n note = {Preprint},\n keywords = {preprint}\n}",
"venue": ""
},
{
"title": "Deep Diffeomorphic Normalizing Flows",
"authors": [
"Hadi Salman",
"Payman Yadollahpour",
"Tom Fletcher",
"Kayhan Batmanghelich"
],
"paper_link": "https://arxiv.org/pdf/1810.03256.pdf",
"code_link": null,
"preprint_link": "https://arxiv.org/abs/1810.03256",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_4_r_1.png",
"bibtex": "@online{salman2018deep,\n author = {Salman, Hadi and Yadollahpour, Payman and Fletcher, Tom and Batmanghelich, Kayhan},\n title = {Deep diffeomorphic normalizing flows},\n year = {2018},\n eprint = {1804.04333},\n eprinttype = {arXiv},\n eprintclass = {cs.LG},\n url = {https://arxiv.org/abs/1810.03256},\n note = {Preprint},\n keywords = {preprint}\n}",
"venue": ""
},
{
"title": "An Efficient and Provable Approach for Mixture Proportion Estimation Using Linear Independence Assumption",
"authors": [
"Xiyu Yu",
"Tongliang Liu",
"Mingming Gong",
"Kayhan Batmanghelich",
"Dacheng Tao"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2018/04/Yu_An_Efficient_and_CVPR_2018_paper.pdf",
"code_link": "https://tongliang-liu.github.io/code/cvpr18_backup.zip",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_5_1_r.png",
"bibtex": "@inproceedings{yu2018efficient,\n title={An efficient and provable approach for mixture proportion estimation using linear independence assumption},\n author={Yu, Xiyu and Liu, Tongliang and Gong, Mingming and Batmanghelich, Kayhan and Tao, Dacheng},\n booktitle={Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},\n pages={4480--4489},\n year={2018}\n}",
"venue": "Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition"
},
{
"title": "Deep Ordinal Regression Network for Monocular Depth Estimation",
"authors": [
"Huan Fu",
"Mingming Gong",
"Chaohui Wang",
"Kayhan Batmanghelich",
"Dacheng Tao"
],
"paper_link": "https://arxiv.org/pdf/1806.02446.pdf",
"code_link": "https://github.com/hufu6371/DORN",
"preprint_link": "https://arxiv.org/abs/1806.02446",
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_6_1_R.png",
"bibtex": "@inproceedings{fu2018deep,\n title={Deep ordinal regression network for monocular depth estimation},\n author={Fu, Huan and Gong, Mingming and Wang, Chaohui and Batmanghelich, Kayhan and Tao, Dacheng},\n booktitle={Proceedings of the IEEE conference on computer vision and pattern recognition},\n pages={2002--2011},\n year={2018}\n}",
"venue": "Proceedings of the IEEE conference on computer vision and pattern recognition"
},
{
"title": "Textured Graph-Based Model of the Lungs: Application on Tuberculosis Type Classification and Multi-drug Resistance Detection",
"authors": [
"Y. D. Cid",
"Kayhan Batmanghelich",
"H. M\u00fcller"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2018/04/paper_114.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2018_7_1_r.png",
"bibtex": null,
"venue": ""
}
],
"2017": [
{
"title": "Transformations Based on Continuous Piecewise-Affine Velocity Fields",
"authors": [
"Oren Freifeld",
"S{\\o Hauberg"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2017/04/07814343.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2017_1_1_r.png",
"bibtex": "@article{freifeld2017transformations,\n title={Transformations based on continuous piecewise-affine velocity fields},\n author={Freifeld, Oren and Hauberg, S{\\o}ren and Batmanghelich, Kayhan and Fisher, Jonn W},\n journal={IEEE transactions on pattern analysis and machine intelligence},\n volume={39},\n number={12},\n pages={2496--2509},\n year={2017},\n publisher={IEEE}\n}",
"venue": "IEEE transactions on pattern analysis and machine intelligence"
},
{
"title": "A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies",
"authors": [
"Jenna Schabdach",
"William M Wells III",
"Michael Cho",
"Kayhan N Batmanghelich"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2017/04/nihms917872.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2017_2_1_r.png",
"bibtex": "@inproceedings{schabdach2017likelihood,\n title={A likelihood-free approach for characterizing heterogeneous diseases in large-scale studies},\n author={Schabdach, Jenna and Wells III, William M and Cho, Michael and Batmanghelich, Kayhan N},\n booktitle={International Conference on Information Processing in Medical Imaging},\n pages={170--183},\n year={2017},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Conference on Information Processing in Medical Imaging"
}
],
"2016": [
{
"title": "Unsupervised Discovery of Emphysema Subtypes in a Large Clinical Cohort",
"authors": [
"Polina Binder",
"Nematollah K Batmanghelich",
"Raul San Jose Estepar",
"Polina Golland"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2016/04/Binder2016_Chapter_UnsupervisedDiscoveryOfEmphyse.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2016_1_1_r.png",
"bibtex": "@inproceedings{binder2016unsupervised,\n title={Unsupervised discovery of emphysema subtypes in a large clinical cohort},\n author={Binder, Polina and Batmanghelich, Nematollah K and Estepar, Raul San Jose and Golland, Polina},\n booktitle={International Workshop on Machine Learning in Medical Imaging},\n pages={180--187},\n year={2016},\n keywords={workshop},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Workshop on Machine Learning in Medical Imaging"
},
{
"title": "Probabilistic Modeling of Imaging, Genetics and the Diagnosis",
"authors": [
"Nematollah K Batmanghelich",
"Adrian Dalca",
"Gerald Quon",
"Mert Sabuncu",
"Polina Golland"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2016/04/batmanghelich_cameraReady.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2016_2_1_r.png",
"bibtex": "@article{batmanghelich2016probabilistic,\n title={Probabilistic modeling of imaging, genetics and diagnosis},\n author={Batmanghelich, Nematollah K and Dalca, Adrian and Quon, Gerald and Sabuncu, Mert and Golland, Polina},\n journal={IEEE transactions on medical imaging},\n volume={35},\n number={7},\n pages={1765--1779},\n year={2016},\n publisher={IEEE}\n}",
"venue": "IEEE transactions on medical imaging"
},
{
"title": "Nonparametric Spherical Topic Modeling with Word Embeddings",
"authors": [
"Kayhan Batmanghelich",
"Ardavan Saeedi",
"Karthik Narasimhan",
"Sam Gershman"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2016/04/P16-2087.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2016_3_1_r.png",
"bibtex": "@inproceedings{batmanghelich-etal-2016-nonparametric,\n title = \"Nonparametric Spherical Topic Modeling with Word Embeddings\",\n author = \"Batmanghelich, Kayhan and\n Saeedi, Ardavan and\n Narasimhan, Karthik and\n Gershman, Sam\",\n editor = \"Erk, Katrin and\n Smith, Noah A.\",\n booktitle = \"Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)\",\n month = aug,\n year = \"2016\",\n address = \"Berlin, Germany\",\n publisher = \"Association for Computational Linguistics\",\n url = \"https://aclanthology.org/P16-2087/\",\n doi = \"10.18653/v1/P16-2087\",\n pages = \"537--542\"\n}\n",
"venue": "Bayesian and grAphical Models for Biomedical Imaging"
},
{
"title": "Inferring Disease Status by non-Parametric Probabilistic Embedding",
"authors": [
"Nematollah Kayhan Batmanghelich",
"Ardavan Saeedi",
"Raul San Jose Estepar",
"Michael Cho",
"William M Wells III"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2016/04/inferringdis-easestatus.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2016_4_1_r.png",
"bibtex": "@inproceedings{batmanghelich2016inferring,\n title={Inferring Disease Status by Non-parametric Probabilistic Embedding},\n author={Batmanghelich, Nematollah Kayhan and Saeedi, Ardavan and Estepar, Raul San Jose and Cho, Michael and Wells III, William M},\n booktitle={Bayesian and grAphical Models for Biomedical Imaging},\n pages={49--57},\n year={2016},\n keywords={workshop},\n publisher={Springer International Publishing Cham}\n}",
"venue": "Bayesian and grAphical Models for Biomedical Imaging"
}
],
"2015": [
{
"title": "Highly-Expressive Spaces of Well-Behaved Transformations: Keeping It Simple",
"authors": [
"Oren Freifeld",
"Soren Hauberg",
"Kayhan Batmanghelich",
"John W Fisher"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2015/04/Freifeld_Highly-Expressive_Spaces_of_ICCV_2015_paper.pdf",
"code_link": "https://github.com/freifeld/cpabDiffeo",
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2015_1_1_r.png",
"bibtex": "@inproceedings{freifeld2015highly,\n title={Highly-expressive spaces of well-behaved transformations: Keeping it simple},\n author={Freifeld, Oren and Hauberg, Soren and Batmanghelich, Kayhan and Fisher, John W},\n booktitle={Proceedings of the IEEE International Conference on Computer Vision},\n pages={2911--2919},\n year={2015}\n}",
"venue": "Proceedings of the IEEE International Conference on Computer Vision"
},
{
"title": "Generative Method to Discover Genetically Driven Image Biomarkers",
"authors": [
"Nematollah K Batmanghelich",
"Ardavan Saeedi",
"Michael Cho",
"Raul San Jose Estepar",
"Polina Golland"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2015/04/200.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2015_2_1_r.png",
"bibtex": "@inproceedings{batmanghelich2015generative,\n title={Generative method to discover genetically driven image biomarkers},\n author={Batmanghelich, Nematollah K and Saeedi, Ardavan and Cho, Michael and Estepar, Raul San Jose and Golland, Polina},\n booktitle={International Conference on Information Processing in Medical Imaging},\n pages={30--42},\n year={2015},\n organization={Springer International Publishing Cham}\n}",
"venue": "International Conference on Information Processing in Medical Imaging"
}
],
"2014": [
{
"title": "Spherical Topic Models for Imaging Phenotype Discovery in Genetic Studies",
"authors": [
"Kayhan N Batmanghelich",
"Michael Cho",
"Raul San Jose",
"Polina Golland"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2014/04/Batmanghelich2014_Chapter_SphericalTopicModelsForImaging.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2014_1_1_r.png",
"bibtex": "@inproceedings{batmanghelich2014spherical,\n title={Spherical topic models for imaging phenotype discovery in genetic studies},\n author={Batmanghelich, Kayhan N and Cho, Michael and Jose, Raul San and Golland, Polina},\n booktitle={Bayesian and grAphical Models for Biomedical Imaging: First International Workshop, BAMBI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers},\n pages={107--117},\n year={2014},\n keywords={workshop},\n organization={Springer International Publishing Cham}\n}",
"venue": "Bayesian and grAphical Models for Biomedical Imaging: First International Workshop, BAMBI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers"
},
{
"title": "Diversifying Sparsity Using Variational Determinantal Point Processes",
"authors": [
"Nematollah Kayhan Batmanghelich",
"Gerald Quon",
"Alex Kulesza",
"Manolis Kellis",
"Polina Golland",
"Luke Bornn"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2014/04/1411.6307.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2014_2_1_r.png",
"bibtex": "@online{batmanghelich2014diversifying,\n author = {Batmanghelich, Nematollah Kayhan and Quon, Gerald and Kulesza, Alex and Kellis, Manolis and Golland, Polina and Bornn, Luke},\n title = {Diversifying sparsity using variational determinantal point processes},\n year = {2014},\n eprint = {1411.6307},\n eprinttype = {arXiv},\n eprintclass = {stat.ML},\n url = {https://arxiv.org/abs/1411.6307},\n note = {Preprint},\n keywords = {preprint}\n}",
"venue": ""
},
{
"title": "BrainPrint in the Computer-Aided Diagnosis of Alzheimer\u2019s Disease",
"authors": [
"Christian Wachinger",
"K Batmanghelich",
"Polina Golland",
"Martin Reuter"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2014/04/brainprint-caddementia14.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2014_5_1_r.png",
"bibtex": "@inproceedings{wachinger2014brainprint,\n title={BrainPrint in the computer-aided diagnosis of Alzheimer\u2019s disease},\n author={Wachinger, Christian and Batmanghelich, K and Golland, Polina and Reuter, Martin},\n booktitle={Proceedings MICCAI workshop challenge on computer-aided diagnosis of dementia based on structural MRI data, Boston, MA, USA},\n keywords={workshop},\n year={2014}\n}",
"venue": "Proceedings MICCAI workshop challenge on computer-aided diagnosis of dementia based on structural MRI data, Boston, MA, USA"
}
],
"2013": [
{
"title": "Joint Modeling of Imaging and Genetics",
"authors": [
"Nematollah K Batmanghelich",
"Adrian V Dalca",
"Mert R Sabuncu",
"Polina Golland"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2013/04/cameraReady.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2013_1_1_r.png",
"bibtex": "@inproceedings{batmanghelich2013joint,\n title={Joint modeling of imaging and genetics},\n author={Batmanghelich, Nematollah K and Dalca, Adrian V and Sabuncu, Mert R and Golland, Polina},\n booktitle={International Conference on Information Processing in Medical Imaging},\n pages={766--777},\n year={2013},\n organization={Springer Berlin Heidelberg Berlin, Heidelberg}\n}",
"venue": "International Conference on Information Processing in Medical Imaging"
}
],
"2012": [
{
"title": "Dominant Component Analysis of Electro-Physiological Connectivity Network",
"authors": [
"Yasser Ghanbari",
"Luke Bloy",
"Kayhan Batmanghelich",
"Timothy PL Roberts",
"Ragini Verma"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2012/04/Ghanbari2012_Chapter_DominantComponentAnalysisOfEle.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2012_1_1_r.png",
"bibtex": "@inproceedings{ghanbari2012dominant,\n title={Dominant component analysis of electrophysiological connectivity networks},\n author={Ghanbari, Yasser and Bloy, Luke and Batmanghelich, Kayhan and Roberts, Timothy PL and Verma, Ragini},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={231--238},\n year={2012},\n organization={Springer Berlin Heidelberg Berlin, Heidelberg}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"
},
{
"title": "An integrated Framework for High Angular Resolution Diffusion Imaging-Based Investigation of Structural Connectivity",
"authors": [
"Luke Bloy",
"Madhura Ingalhalikar",
"Nematollah K Batmanghelich",
"Robert T Schultz",
"Timothy PL Roberts",
"Ragini Verma"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2012/04/brain.2011.0070.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2014_4_1_r.png",
"bibtex": "@article{bloy2012integrated,\n title={An Integrated Framework for High Angular Resolution Diffusion Imaging--Based Investigation of Structural Connectivity},\n author={Bloy, Luke and Ingalhalikar, Madhura and Batmanghelich, Nematollah K and Schultz, Robert T and Roberts, Timothy PL and Verma, Ragini},\n journal={Brain connectivity},\n volume={2},\n number={2},\n pages={69--79},\n year={2012},\n publisher={Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA}\n}",
"venue": "Brain connectivity"
},
{
"title": "Generative-Discriminative Basis Learning for Medical Imaging",
"authors": [
"Nematollah K Batmanghelich",
"Ben Taskar",
"Christos Davatzikos"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2012/04/tmi2012.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2012_3_1-2.png",
"bibtex": "@article{batmanghelich2011generative,\n title={Generative-discriminative basis learning for medical imaging},\n author={Batmanghelich, Nematollah K and Taskar, Ben and Davatzikos, Christos},\n journal={IEEE transactions on medical imaging},\n volume={31},\n number={1},\n pages={51--69},\n year={2011},\n publisher={IEEE}\n}",
"venue": "IEEE transactions on medical imaging"
}
],
"2011": [
{
"title": "Regularized Tensor Factorization for Multi-Modality Medical Image Classification",
"authors": [
"Nematollah Batmanghelich",
"Aoyan Dong",
"Ben Taskar",
"Christos Davatzikos"
],
"paper_link": "https://www.batman-lab.com/wp-content/uploads/2011/04/miccai2011.pdf",
"code_link": null,
"preprint_link": null,
"image_icon_link": "https://www.batman-lab.com/wp-content/uploads/2020/07/2011_1_1_r.png",
"bibtex": "@inproceedings{batmanghelich2011regularized,\n title={Regularized tensor factorization for multi-modality medical image classification},\n author={Batmanghelich, Nematollah and Dong, Aoyan and Taskar, Ben and Davatzikos, Christos},\n booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},\n pages={17--24},\n year={2011},\n organization={Springer Berlin Heidelberg Berlin, Heidelberg}\n}",
"venue": "International Conference on Medical Image Computing and Computer-Assisted Intervention"