From f44f0db05d4e76010116c1880a98e38925467060 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Thu, 1 May 2025 16:12:12 +0100 Subject: [PATCH 1/4] Update cython from 0.29.23 to 3.0.12 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 6380aca..435b70b 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,4 +1,4 @@ -Cython==0.29.23 +Cython==3.0.12 numpy==1.21.0 pysam==0.16.0.1 nose==1.3.7 From fd5320f079d823e39f4d3d98223026ad955f91f7 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Thu, 1 May 2025 16:12:13 +0100 Subject: [PATCH 2/4] Update numpy from 1.21.0 to 2.2.5 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 435b70b..cbcffe3 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.0.12 -numpy==1.21.0 +numpy==2.2.5 pysam==0.16.0.1 nose==1.3.7 tables==3.6.1 From 7337618038b2eb291a84963701c72d7da9a7c120 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Thu, 1 May 2025 16:12:13 +0100 Subject: [PATCH 3/4] Update pysam from 0.16.0.1 to 0.23.0 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index cbcffe3..9a705f4 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,5 +1,5 @@ Cython==3.0.12 numpy==2.2.5 -pysam==0.16.0.1 +pysam==0.23.0 nose==1.3.7 tables==3.6.1 From 77bb6abf803a52266d0087fcede98dcaef0af596 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Thu, 1 May 2025 16:12:14 +0100 Subject: [PATCH 4/4] Update tables from 3.6.1 to 3.10.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 9a705f4..e17f7e6 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -2,4 +2,4 @@ Cython==3.0.12 numpy==2.2.5 pysam==0.23.0 nose==1.3.7 -tables==3.6.1 +tables==3.10.2