opensource-pestmodels/pyproject.toml at master · agstack/opensource-pestmodels · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
[build-system]
requires = ["setuptools>=68.0", "setuptools-scm>=8.0"]
build-backend = "setuptools.build_meta"

[project]
name = "agstack-pnd"
version = "2.0.0a1"
description = "Hierarchical pest and disease modeling framework for AgStack (Linux Foundation)"
readme = "README.md"
license = {text = "Apache-2.0"}
requires-python = ">=3.11"
authors = [
    {name = "AgStack Foundation", email = "info@agstack.org"},
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Atmospheric Science",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
keywords = ["agriculture", "pest", "disease", "modeling", "agstack", "gdd", "ipm"]
dependencies = [
    "pydantic>=2.0",
    "numpy>=1.26",
    "httpx>=0.27",
    "python-dateutil>=2.9",
]

[project.optional-dependencies]
server = [
    "fastapi>=0.115",
    "uvicorn[standard]>=0.30",
    "sqlalchemy[asyncio]>=2.0",
    "asyncpg>=0.30",
    "alembic>=1.14",
    "apscheduler>=3.10",
    "mcp>=1.0",
]
dev = [
    "pytest>=8.0",
    "pytest-asyncio>=0.24",
    "pytest-cov>=5.0",
    "ruff>=0.8",
    "mypy>=1.13",
    "pre-commit>=4.0",
]
docs = [
    "sphinx>=8.0",
    "sphinx-autodoc-typehints>=2.0",
    "sphinx-rtd-theme>=3.0",
    "myst-parser>=4.0",
]

[project.urls]
Homepage = "https://github.com/agstack/opensource-pestmodels"
Documentation = "https://agstack.github.io/opensource-pestmodels"
Repository = "https://github.com/agstack/opensource-pestmodels"
Issues = "https://github.com/agstack/opensource-pestmodels/issues"

[project.entry-points."agstack_pnd.models"]
growing_degree_days = "agstack_pnd.models.weather.growing_degree_days:GrowingDegreeDays"
chill_hours = "agstack_pnd.models.weather.chill_hours:ChillHoursUtah"
chill_hours_3245 = "agstack_pnd.models.weather.chill_hours:ChillHours3245"
chill_portions = "agstack_pnd.models.weather.chill_portions:ChillPortions"
accumulated_precip = "agstack_pnd.models.weather.accumulated_precip:AccumulatedPrecipitation"
leaf_wetness_cart = "agstack_pnd.models.agronomic.leaf_wetness_cart:LeafWetnessCART"
leaf_wetness_rh = "agstack_pnd.models.agronomic.leaf_wetness_rh:LeafWetnessRH"
vpd = "agstack_pnd.models.agronomic.vpd:VapourPressureDeficit"
humidity_streak = "agstack_pnd.models.agronomic.humidity_streak:HumidityStreak"
phenology = "agstack_pnd.models.agronomic.phenology:PhenologicalGating"
fuzzy_mamdani = "agstack_pnd.models.disease.fuzzy_mamdani:FuzzyMamdaniRisk"
rule_based = "agstack_pnd.models.disease.rule_based:RuleBasedRisk"
powdery_mildew_grape = "agstack_pnd.models.disease.powdery_mildew_grape:PowderyMildewGrape"

[tool.setuptools.packages.find]
where = ["src"]

[tool.ruff]
target-version = "py311"
line-length = 99

[tool.ruff.lint]
select = ["E", "F", "W", "I", "N", "UP", "B", "A", "SIM", "TCH"]

[tool.mypy]
python_version = "3.11"
strict = true
warn_return_any = true
warn_unused_configs = true

[tool.pytest.ini_options]
testpaths = ["tests"]
asyncio_mode = "auto"