Espresso companion dataset

[tinatucci]

Hi, I was wondering how to access the Espresso projects' nanopore RNA-sequencing data on ENA as it seems the data is unavailable for download; "Standard FASTQ not yet generated or failed to process". If you could advise whether there is a need apply for access or if there is an alternative way to download the data that would be greatly appreciated. Thanks in advanced.

[EricKutschera]

There are download links at this page: https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP353338

From the paper (https://doi.org/10.1126/sciadv.abq5072), the data was uploaded to GEO under GSE192955 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE192955). It looks like the ENA page for ESPRESSO links to the GEO page. The main GEO page doesn't have the raw data, but there is a link to the SRA page: https://www.ncbi.nlm.nih.gov/sra?term=SRP353338

From the SRA page you can get to a page listing all of the download links by clicking the link for one of the specific datasets then there is another link to the SRA study page