Installation Error

[lisch7]

Hi,

I tried to install this package using the following code but errors occurred:

> pak::pak("Yunuuuu/mire")
! Using bundled GitHub PAT. Please add your own PAT using `gitcreds::gitcreds_set()`.
Error:                                                    
! error in pak subprocess
Caused by error: 
! Could not solve package dependencies:
* Yunuuuu/mire: ! pkgdepends resolution error for Yunuuuu/mire.
Caused by error: 
! Can't find GitHub repo Yunuuuu/mire.

> pak::pak("mire")
Error:                                  
! error in pak subprocess
Caused by error: 
! Could not solve package dependencies:
* mire: Can't find package called mire.
Type .Last.error to see the more details.

Could you please address this issue? Thanks.

[ShixiangWang]

You have to run command gitcreds::gitcreds_set() as suggested.

[lisch7]

Hi, I have run command gitcreds::gitcreds_set() and set the token successfully. However, same error was reported. I tried to install the package using my PC, and same issue was occured.

[lisch7]

I think the right way to install the package is pak::pak("WangLabCSU/mire") rather than pak::pak("Yunuuuu/mire") (Home page installation tutorial). However, pak::pak("mire") still can not work.

For me, when I run pak::pak("WangLabCSU/mire"), error was occured:

! error in pak subprocess
Caused by error in `stop_task_build(state, worker)`:
! Failed to build source package mire.
Full installation output:

   File /tmp/RtmpARFwKq/callr-uev-3720e026246d97 contains invalid line(s)
      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
   They were ignored

* installing *source* package ‘mire’ ...
** this is package ‘mire’ version ‘0.0.1.9000’
staged installation is only possible with locking
** using non-staged installation

   File /tmp/RtmpARFwKq/callr-uev-3720e026246d97 contains invalid line(s)
      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
   They were ignored

Using cargo 1.75.0
Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’
gcc -I"/usr/share/R/include" -DNDEBUG       -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J99gOV/r-base-4.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wall -pedantic -fdiagnostics-color=always -c entrypoint.c -o entrypoint.o
# Check if NOT_CRAN is false and unzip vendor.tar.xz if so
if [ "" != "true" ]; then \
	if [ -f ./rust/vendor.tar.xz ]; then \
		tar xf rust/vendor.tar.xz && \
		mkdir -p /tmp/RtmpMSIgPP/R.INSTALL37340242f7fcc0/mire/src/.cargo && \
		cp rust/vendor-config.toml /tmp/RtmpMSIgPP/R.INSTALL37340242f7fcc0/mire/src/.cargo/config.toml; \
	fi; \
fi
export CARGO_HOME=/tmp/RtmpMSIgPP/R.INSTALL37340242f7fcc0/mire/src/.cargo && \
export PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/usr/lib/rstudio-server/bin/quarto/bin:/usr/lib/rstudio-server/bin/postback:/home/manager/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build  --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target 
error: failed to parse lock file at: /tmp/RtmpMSIgPP/R.INSTALL37340242f7fcc0/mire/src/rust/Cargo.lock

Caused by:
  lock file version 4 requires `-Znext-lockfile-bump`
make: *** [Makevars:28: rust/target/release/libmire.a] Error 101
ERROR: compilation failed for package ‘mire’
* removing ‘/tmp/RtmpARFwKq/pkg-lib3720e043ae9825/mire’
Type .Last.error to see the more details.

What's the reason? Is the cmake version too low?

Thanks.

[ShixiangWang]

Caused by:
  lock file version 4 requires `-Znext-lockfile-bump`

@Yunuuuu Take a look when you got time.

[Yunuuuu]

I have tested it on my computer without any errors. I will investigate the error more thoroughly.

[ShixiangWang]

great ---- Replied Message ---- From Yun ***@***.***> Date 12/03/2025 13:52 To ***@***.***> Cc Shixiang Wang ***@***.***>***@***.***> Subject Re: [WangLabCSU/mire] Installation Error (Issue #1) Yunuuuu left a comment (WangLabCSU/mire#1) I have tested it on my computer without any errors. I will investigate the error more thoroughly. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: ***@***.***>