From 261ebaff31da66271d5b5223a3d291fe5f456211 Mon Sep 17 00:00:00 2001 From: Daniel Date: Tue, 23 Sep 2025 16:03:58 +1000 Subject: [PATCH 1/4] Add permissions for contents and pull-requests --- .github/workflows/update.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/update.yml b/.github/workflows/update.yml index e65f430..14b8cc8 100644 --- a/.github/workflows/update.yml +++ b/.github/workflows/update.yml @@ -5,6 +5,10 @@ on: schedule: - cron: '0 0 1 9 *' # run every first of September +permissions: + contents: write + pull-requests: write + jobs: update-r: runs-on: ubuntu-latest From 39160639f3ba1b2ac2dcfb6920f29cc3ec5177eb Mon Sep 17 00:00:00 2001 From: Daniel Date: Tue, 23 Sep 2025 16:07:32 +1000 Subject: [PATCH 2/4] Update permissions in update.yml for jobs --- .github/workflows/update.yml | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/.github/workflows/update.yml b/.github/workflows/update.yml index 14b8cc8..5a7a432 100644 --- a/.github/workflows/update.yml +++ b/.github/workflows/update.yml @@ -5,12 +5,13 @@ on: schedule: - cron: '0 0 1 9 *' # run every first of September -permissions: - contents: write - pull-requests: write - jobs: update-r: + permissions: + contents: write + id-token: write + issues: write + pull-requests: write runs-on: ubuntu-latest steps: - name: Checkout repository From 394aa996736c4399ed90aab6abf433a48f2204e6 Mon Sep 17 00:00:00 2001 From: Daniel Date: Tue, 23 Sep 2025 16:13:33 +1000 Subject: [PATCH 3/4] Update update.yml --- .github/workflows/update.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/update.yml b/.github/workflows/update.yml index 5a7a432..9ca77b1 100644 --- a/.github/workflows/update.yml +++ b/.github/workflows/update.yml @@ -21,7 +21,6 @@ jobs: - name: Update flake.lock uses: DeterminateSystems/update-flake-lock@v27 with: - token: ${{ secrets.GH_TOKEN_FOR_UPDATES }} branch: update_cran_date pr-title: "Update CRAN date" pr-labels: | From 1e20ff6db2db8ec49392407c0f9a66efae43f121 Mon Sep 17 00:00:00 2001 From: Daniel Date: Tue, 23 Sep 2025 17:03:28 +1000 Subject: [PATCH 4/4] Fix annotation label and parsing in plot --- 00-Preliminaries.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/00-Preliminaries.Rmd b/00-Preliminaries.Rmd index a38641d..8b3ac14 100644 --- a/00-Preliminaries.Rmd +++ b/00-Preliminaries.Rmd @@ -365,7 +365,7 @@ ggplot(data_1) + geom_path(aes(x=reorder(x, y2),y=y2), color="steelblue", size = 1, linetype = "dashed", group = 1) + geom_segment(aes(x="post",y=data_1$y2[3], xend="post", yend=data_1$y3[3]),size=1, color="darkmagenta", arrow = arrow(length = unit(0.1, "inches"))) + geom_segment(aes(x="post",y=data_1$y3[3], xend="post", yend=data_1$y2[3]),size=1, color="darkmagenta", arrow = arrow(length = unit(0.1, "inches"))) + - annotate("text", x = 3.1, y = (data_1$y3[3]+data_1$y2[3])/2, label = expression(Delta), size = 5, color = "darkmagenta") + + annotate("text", x = 3.1, y = (y3[3]+y2[3])/2, label = "Delta", parse = TRUE, size = 5, color = "darkmagenta") + geom_vline(xintercept = (1.5+2.5)/2, col='grey', lwd=1,linetype="dotted") + #annotate("text", x = 1.59, y = 0.5, label = "Intervention", size = 3) + annotate("text", x = 3.13, y = data_1$y3[3], label = "Yt,post", size = 3) +