Describe the bug
Phables 1.5.0 fails to create the phables.yaml and phylotree.yaml conda environments on an HPC cluster due to dependency conflicts with the system's glibc version.
To Reproduce
Install Phables 1.5.0 on OSC Pitzer cluster (RHEL 9, glibc 2.34)
Run command:
phables run --input assembly.gfa --reads reads/ --output output/ --threads 48 --mincov 5 --minlength 1000 -- --conda-frontend conda --omit-from build_phylotree
Expected behavior
Phables should successfully create conda environments and run on HPC clusters with glibc 2.34.
Screenshots
If applicable, add screenshots to help explain your problem.
Desktop (please complete the following information):
OS: Red Hat Enterprise Linux 9.4 (Plow)
Cluster: Ohio Supercomputer Center Pitzer
Phables version: 1.5.0
Python: 3.10
Additional context
The --omit-from build_phylotree workaround does not fully resolve the issue as phables.yaml environment also fails to install.
Describe the bug
Phables 1.5.0 fails to create the phables.yaml and phylotree.yaml conda environments on an HPC cluster due to dependency conflicts with the system's glibc version.
To Reproduce
Install Phables 1.5.0 on OSC Pitzer cluster (RHEL 9, glibc 2.34)
Run command:
phables run --input assembly.gfa --reads reads/ --output output/ --threads 48 --mincov 5 --minlength 1000 -- --conda-frontend conda --omit-from build_phylotree
Expected behavior
Phables should successfully create conda environments and run on HPC clusters with glibc 2.34.
Screenshots
If applicable, add screenshots to help explain your problem.
Desktop (please complete the following information):
OS: Red Hat Enterprise Linux 9.4 (Plow)
Cluster: Ohio Supercomputer Center Pitzer
Phables version: 1.5.0
Python: 3.10
Additional context
The --omit-from build_phylotree workaround does not fully resolve the issue as phables.yaml environment also fails to install.