ASAP/modules.json at main · ToolsVanBox/ASAP · GitHub

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{
  "name": "",
  "homePage": "",
  "repos": {
    "https://github.com/nf-core/modules.git": {
      "modules": {
        "nf-core": {
          "bwa/index": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "bwa/mem": {
            "branch": "master",
            "git_sha": "3dc300ddcaa563c1e3503477557c0e0def6df2ce",
            "installed_by": ["modules", "fastq_align_bwa"]
          },
          "bwamem2/index": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "bwamem2/mem": {
            "branch": "master",
            "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
            "installed_by": ["modules"]
          },
          "custom/dumpsoftwareversions": {
            "branch": "master",
            "git_sha": "05c280924b6c768d484c7c443dad5e605c4ff4b4",
            "installed_by": ["modules"]
          },
          "fastqc": {
            "branch": "master",
            "git_sha": "bd8092b67b5103bdd52e300f75889442275c3117",
            "installed_by": ["modules"]
          },
          "gatk4/applybqsr": {
            "branch": "master",
            "git_sha": "240937a2a9c30298110753292be041188891f2cb",
            "installed_by": ["modules"]
          },
          "gatk4/baserecalibrator": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "gatk4/combinegvcfs": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "gatk4/genotypegvcfs": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "gatk4/haplotypecaller": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "gatk4/markduplicates": {
            "branch": "master",
            "git_sha": "0a261469640941da2488e1a5aa023b64db837c70",
            "installed_by": ["modules"]
          },
          "gatk4/markduplicatesspark": {
            "branch": "master",
            "git_sha": "0a261469640941da2488e1a5aa023b64db837c70",
            "installed_by": ["modules"]
          },
          "gatk4/mergevcfs": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "gatk4/splitintervals": {
            "branch": "master",
            "git_sha": "541811d779026c5d395925895fa5ed35e7216cc0",
            "installed_by": ["modules"]
          },
          "multiqc": {
            "branch": "master",
            "git_sha": "a6e11ac655e744f7ebc724be669dd568ffdc0e80",
            "installed_by": ["modules"]
          },
          "picard/crosscheckfingerprints": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["modules"]
          },
          "samtools/collate": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["bam_markduplicates_samtools"]
          },
          "samtools/fixmate": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["bam_markduplicates_samtools"]
          },
          "samtools/flagstat": {
            "branch": "master",
            "git_sha": "570ec5bcfe19c49e16c9ca35a7a116563af6cc1c",
            "installed_by": ["bam_stats_samtools"]
          },
          "samtools/idxstats": {
            "branch": "master",
            "git_sha": "e662ab16e0c11f1e62983e21de9871f59371a639",
            "installed_by": ["bam_stats_samtools"]
          },
          "samtools/index": {
            "branch": "master",
            "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
            "installed_by": ["bam_sort_stats_samtools"]
          },
          "samtools/markdup": {
            "branch": "master",
            "git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
            "installed_by": ["bam_markduplicates_samtools"]
          },
          "samtools/merge": {
            "branch": "master",
            "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
            "installed_by": ["modules"]
          },
          "samtools/sort": {
            "branch": "master",
            "git_sha": "a0f7be95788366c1923171e358da7d049eb440f9",
            "installed_by": [
              "bam_markduplicates_samtools",
              "bam_sort_stats_samtools"
            ]
          },
          "samtools/stats": {
            "branch": "master",
            "git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
            "installed_by": ["bam_stats_samtools"]
          }
        }
      },
      "subworkflows": {
        "nf-core": {
          "bam_markduplicates_samtools": {
            "branch": "master",
            "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
            "installed_by": ["subworkflows"]
          },
          "bam_sort_stats_samtools": {
            "branch": "master",
            "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
            "installed_by": ["fastq_align_bwa"]
          },
          "bam_stats_samtools": {
            "branch": "master",
            "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
            "installed_by": ["bam_sort_stats_samtools"]
          },
          "fastq_align_bwa": {
            "branch": "master",
            "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
            "installed_by": ["subworkflows"]
          }
        }
      }
    }
  }
}