The CSV file I export from benchlign looks like below. For me it would be extremely valuable if this file could be read by OVE.
Name,Feature,Type,Color,Match type
15 long linker based on the one I designed,APGSGTGGGSGSAPG,,#85DAE9,protein
20 aa linker based on the one I designed,APGGSGGGTGGGSGGGSAPG,,#C7B0E3,protein
22 aa linker,GPGSGGGGSGGGGSGGGGSGPG,,#f58a5e,protein
38 aa lkong linker,APGGSGGGSGGGSGGGSGGGSGGGTGGGSGGGSAGSPG,,#75C6A9,protein
3d6 variable domain LC,YVVMTQTPLTLSVTIGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKISRIEAEDLGLYYCWQGTHFPRTFGGGTKLEIK,,#ff9ccd,protein
3d6 variable HC,EVKLVESGGGLVKPGASLKLSCAASGFTFSNYGMSWVRQNSDKRLEWVASIRSGGGRTYYSDNVKGRFTISRENAKNTLYLQMSSLKSEDTALYYCVRYDHYSGSSDYWGQGTTVTVS,,#f58a5e,protein
@tnrich
I am switshing to use OVE from prevoiusly using Benchling where I had several hundreds of proteins annotated. In benchling you can save features both as proteins and as DNA. Is this possible for OVE? I have my features saved as protiens in 95% of the cases since to me the DNA sequence is not so important but the resulting protein is. If not is this something that you could implement? In benchling you can export all the features that you have annotated and it would be great if this file could be used to auto annotate the proteins in OVE but the files seems in compatible.
The CSV file I export from benchlign looks like below. For me it would be extremely valuable if this file could be read by OVE.