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# Generated by roxygen2: do not edit by hand
S3method(as.data.frame,codiv)
S3method(print,codiv)
S3method(summary,codiv)
export(check_inputs)
export(codiv)
export(codiv_null_scans)
export(collapse_monophyletic)
export(filter_results)
export(hommola)
export(hommola_wf)
export(host_codiv_summary)
export(host_symbiont_links)
export(loo_host_analysis)
export(molecular_clock)
export(paco_wf)
export(plot_codiv_trees)
export(sensitivity_analysis)
export(simulate_codiv_data)
export(topology_wf)
importFrom(TreeDist,DifferentPhylogeneticInfo)
importFrom(TreeDist,JaccardRobinsonFoulds)
importFrom(TreeDist,MatchingSplitDistance)
importFrom(TreeDist,MatchingSplitInfoDistance)
importFrom(TreeDist,MutualClusteringInfo)
importFrom(TreeDist,NyeSimilarity)
importFrom(TreeDist,SharedPhylogeneticInfo)
importFrom(TreeDist,TreeDistance)
importFrom(ape,Nnode)
importFrom(ape,extract.clade)
importFrom(ape,keep.tip)
importFrom(ape,node.depth.edgelength)
importFrom(ape,write.tree)
importFrom(paco,PACo)
importFrom(paco,add_pcoord)
importFrom(paco,prepare_paco_data)
importFrom(pbmcapply,pbmclapply)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,reorder)
importFrom(stats,setNames)
importFrom(utils,read.table)
importFrom(utils,write.table)