Skip to content

Commit e4fb2e6

Browse files
committed
clean
1 parent b0ab465 commit e4fb2e6

171 files changed

Lines changed: 1320 additions & 11832 deletions

File tree

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

README.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -5,7 +5,7 @@
55
<div style="text-align: center" align="center">
66
<a href="https://docs.pylabrobot.org"><strong>Docs</strong></a> |
77
<a href="https://discuss.pylabrobot.org"><strong>Forum</strong></a> |
8-
<a href="https://docs.pylabrobot.org/stable/user_guide/_getting-started/installation.html"><strong>Installation</strong></a> |
8+
<a href="https://docs.pylabrobot.org/stable/user_guide/getting-started/installation.html"><strong>Installation</strong></a> |
99
<a href="https://docs.pylabrobot.org/stable/user_guide/index.html"><strong>Getting started</strong></a>
1010
</div>
1111

@@ -193,7 +193,7 @@ await tc.run_pcr_profile(
193193

194194
[docs.pylabrobot.org](https://docs.pylabrobot.org)
195195

196-
- [Installation](https://docs.pylabrobot.org/stable/user_guide/_getting-started/installation.html)
196+
- [Installation](https://docs.pylabrobot.org/stable/user_guide/getting-started/installation.html)
197197
- [Getting Started](https://docs.pylabrobot.org/stable/user_guide/index.html)
198198
- [Contributing](https://docs.pylabrobot.org/stable/contributor_guide/index.html)
199199
- [API Reference](https://docs.pylabrobot.org/stable/api/pylabrobot.html)

_typos.toml

Lines changed: 16 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -30,6 +30,22 @@ RHE = "RHE"
3030
caf = "caf"
3131
scap = "scap"
3232

33+
# Sartorius Entris II, a product name.
34+
Entris = "Entris"
35+
36+
# FluidX IntelliXcap firmware vocabulary. `*WasNotSuccesful` are fault tokens
37+
# keyed in ERROR_MESSAGES and passed to _wait_for_idle as the expected error
38+
# frame; `onnOK` and `LOK` are reply frames. Renaming them breaks the driver.
39+
Succesful = "Succesful"
40+
onn = "onn"
41+
LOK = "LOK"
42+
43+
# HighRes LidValet settings keys. HighResLidValetSettings.from_lines matches
44+
# each dataclass field name uppercased against the device's `settings` output,
45+
# so these spellings are the device's, not ours.
46+
ouput = "ouput"
47+
hegiht = "hegiht"
48+
3349
[files]
3450
extend-exclude = [
3551
"*.ipynb"

docs/_templates/autosummary/class.rst

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,6 @@
11
:orphan:
22

3+
{% set exclude_methods = ["from_bytes", "to_bytes"] %}
34
{{ fullname | escape | underline }}
45

56
.. currentmodule:: {{ module }}
@@ -24,7 +25,7 @@
2425

2526
.. autosummary::
2627
:toctree: .
27-
{% for item in methods %}
28+
{% for item in methods if item not in exclude_methods %}
2829
~{{ objname }}.{{ item }}
2930
{%- endfor %}
3031
{% endif %}

docs/api/pylabrobot.agilent.rst

Lines changed: 24 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -14,8 +14,32 @@ BioTek EL406
1414
:recursive:
1515

1616
EL406
17+
18+
.. currentmodule:: pylabrobot.agilent.biotek.el406.plate_washer
19+
20+
.. autosummary::
21+
:toctree: _autosummary
22+
:nosignatures:
23+
:recursive:
24+
1725
PlateWasher
26+
27+
.. currentmodule:: pylabrobot.agilent.biotek.el406.syringe_dispenser
28+
29+
.. autosummary::
30+
:toctree: _autosummary
31+
:nosignatures:
32+
:recursive:
33+
1834
SyringeDispenser
35+
36+
.. currentmodule:: pylabrobot.agilent.biotek.el406.peristaltic_dispenser
37+
38+
.. autosummary::
39+
:toctree: _autosummary
40+
:nosignatures:
41+
:recursive:
42+
1943
PeristalticDispenser
2044

2145

@@ -58,10 +82,5 @@ VSpin
5882
:recursive:
5983

6084
VSpin
61-
VSpinDriver
62-
VSpinCentrifugeBackend
6385
Access2
6486
Access2Driver
65-
66-
.. autoclass:: pylabrobot.agilent.vspin.VSpinCentrifugeBackend.SpinParams
67-
:members:

docs/api/pylabrobot.azenta.rst

Lines changed: 0 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -57,5 +57,3 @@ FluidX IntelliXcap 96
5757
FirmwareVersions
5858
get_error_message
5959
is_recoverable_error
60-
ERROR_CODE_MESSAGES
61-
RECOVERABLE_ERROR_CODES

docs/api/pylabrobot.bmg_labtech.rst

Lines changed: 0 additions & 53 deletions
This file was deleted.

docs/api/pylabrobot.brooks.rst

Lines changed: 10 additions & 16 deletions
Original file line numberDiff line numberDiff line change
@@ -13,19 +13,13 @@ PreciseFlex
1313
:nosignatures:
1414
:recursive:
1515

16-
PreciseFlex400
17-
PreciseFlexDriver
18-
PreciseFlexArmBackend
19-
PreciseFlex3400Backend
20-
21-
.. autoclass:: pylabrobot.brooks.precise_flex.PreciseFlexArmBackend.PickUpParams
22-
:members:
23-
24-
.. autoclass:: pylabrobot.brooks.precise_flex.PreciseFlexArmBackend.DropParams
25-
:members:
26-
27-
.. autoclass:: pylabrobot.brooks.precise_flex.PreciseFlexArmBackend.MoveToJointPositionParams
28-
:members:
29-
30-
.. autoclass:: pylabrobot.brooks.precise_flex.PreciseFlexArmBackend.MoveToLocationParams
31-
:members:
16+
PreciseFlex
17+
PreciseFlexConfiguration
18+
PreciseFlexCartesianPose
19+
WorkEnvelope
20+
MotionProfile
21+
Axis
22+
Wrist
23+
ElbowOrientation
24+
PreciseFlexError
25+
OutOfRangeOfMotionError

docs/api/pylabrobot.byonoy.rst

Lines changed: 3 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -14,8 +14,8 @@ Absorbance 96
1414
:recursive:
1515

1616
ByonoyAbsorbance96
17-
ByonoyAbsorbance96Backend
1817
ByonoyAbsorbanceBaseUnit
18+
AbsorbanceResult
1919
byonoy_a96a
2020
byonoy_a96a_detection_unit
2121
byonoy_a96a_illumination_unit
@@ -33,14 +33,12 @@ Luminescence 96
3333
:recursive:
3434

3535
ByonoyLuminescence96
36-
ByonoyLuminescence96Backend
3736
ByonoyLuminescenceBaseUnit
37+
LuminescenceResult
38+
Lum96IntegrationMode
3839
byonoy_l96
3940
byonoy_l96_base_unit
4041
byonoy_l96_reader_unit
4142
byonoy_l96a
4243
byonoy_l96a_base_unit
4344
byonoy_l96a_reader_unit
44-
45-
.. autoclass:: pylabrobot.byonoy.luminescence_96.ByonoyLuminescence96Backend.LuminescenceParams
46-
:members:

0 commit comments

Comments
 (0)