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ROI Map (too many ROIs selected) #5

@StephanTir

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@StephanTir

Dear RS-FISH team,

thanks a lot for this great tool! I have an issue that is rather indirectly related to the RS-FISH plugin but which might be of interest for the people who are using it:

I have a relatively large image (9230 x 7688) with ~ 360,000 FISH spots. Spot detection with RS-FISH works nicely but I have a problem with creating a labeled mask from ROIs. I usually use the LOCI "ROI Map" command which works fine for smaller images with less spots, but for the above described case I get the following Error when I try to run "ROI Map" after running RS-FISH:

There are too many ROIs selected

Do you have an alternative or workaround for this problem?

Thanks a lot in advance!

Best

Stephan

Too_many_ROIs

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