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Documentation: broken links automatic reportΒ #3955

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Status Count
πŸ” Total 1389
βœ… Successful 669
⏳ Timeouts 15
πŸ”€ Redirected 248
πŸ‘» Excluded 177
❓ Unknown 0
🚫 Errors 246
β›” Unsupported 34

Errors per input

Errors in base/db/R/pft.add.spp.R

Errors in base/qaqc/vignettes/module_output.Rmd

Errors in base/utils/R/transformstats.R

Errors in base/utils/R/utils.R

Errors in base/utils/tests/testthat/test.utils.R

  • [ERROR] http://pecan/ | Network error: Connection failed. Check network connectivity and firewall settings (error sending request for url (http://pecan/)): Connection failed. Check network connectivity and firewall settings

Errors in base/visualization/R/visually.weighted.watercolor.plots.R

Errors in book_source/01_introduction/01_project_overview.Rmd

Errors in book_source/01_introduction/02_code_of_conduct.Rmd

Errors in book_source/02_demos_tutorials_workflows/03_web_workflow.Rmd

Errors in book_source/02_demos_tutorials_workflows/04_more_web_interface/02_hidden_analyses.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/02_git/01_using-git.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04-testing.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/02_quickstart.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/04_models.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/07_migrate.Rmd

  • [ERROR] http://server/bety/ | Network error: Connection failed. Check network connectivity and firewall settings (error sending request for url (http://server/bety/)): Connection failed. Check network connectivity and firewall settings

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/08_pecan_api.Rmd

Errors in book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/09_rabbitmq.Rmd

  • [ERROR] file:///home/runner/work/pecan/pecan/book_source/02_demos_tutorials_workflows/05_developer_workflows/04_docker/amqp:/username:password | Cannot find file: File not found. Check if file exists and path is correct

Errors in book_source/03_topical_pages/04_R_workflow.Rmd

Errors in book_source/03_topical_pages/05_models/ed.Rmd

Errors in book_source/03_topical_pages/05_models/stics.Rmd

Errors in book_source/03_topical_pages/06_data/01_meteorology.Rmd

Errors in book_source/03_topical_pages/07_remote_access/01_pecan_api.Rmd

Errors in book_source/03_topical_pages/08_Database-Synchronization.Rmd

Errors in book_source/03_topical_pages/09_standalone_tools.Rmd

Errors in book_source/03_topical_pages/11_adding_to_pecan.Rmd

Errors in book_source/03_topical_pages/92_workflow_modules.Rmd

Errors in book_source/03_topical_pages/93_installation/01_setup/PEcAn-in-the-Cloud.Rmd

Errors in book_source/03_topical_pages/93_installation/01_setup/shiny.Rmd

Errors in book_source/03_topical_pages/93_installation/01_setup/thredds.Rmd

  • [ERROR] file:///home/runner/work/pecan/pecan/book_source/03_topical_pages/93_installation/01_setup/http:/server:port/thredds | Cannot find file: File not found. Check if file exists and path is correct
  • [404] http://www.unidata.ucar.edu/software/thredds/current/tds/ | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in book_source/03_topical_pages/93_installation/03_install_OS/02_Installing-PEcAn-CentOS.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/04_Installing-PEcAn-OSX.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/05_install_BETY.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/06_install_models/install_DALEC.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/06_install_models/install_ED2.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/06_install_models/install_LINKAGES.Rmd

Errors in book_source/03_topical_pages/93_installation/03_install_OS/07_Installing-PEcAn-Data.Rmd

Errors in book_source/04_appendix/00_appendix.Rmd

  • [ERROR] https://modex.bnl.gov/ | Network error: Connection failed. Check network connectivity and firewall settings (error sending request for url (https://modex.bnl.gov/)): Connection failed. Check network connectivity and firewall settings

Errors in book_source/04_appendix/03_courses_taught.Rmd

Errors in book_source/04_appendix/07_singularity.Rmd

Errors in book_source/06_reference/02_models/sibcasa.Rmd

Errors in book_source/index.Rmd

Errors in contrib/browndog/README.md

Errors in CONTRIBUTING.md

Errors in DEV-INTRO.md

  • [ERROR] file:///home/runner/work/pecan/pecan/docker-compose.dev.yaml | Cannot find file: File not found. Check if file exists and path is correct

Errors in docker/docs/index.html

  • [ERROR] error: | Error building URL for "/bety/" (Attribute: Some("href")): Cannot convert path '/bety/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/minio/" (Attribute: Some("href")): Cannot convert path '/minio/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/pecan/" (Attribute: Some("href")): Cannot convert path '/pecan/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/pecan/history.php" (Attribute: Some("href")): Cannot convert path '/pecan/history.php' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/rstudio/" (Attribute: Some("href")): Cannot convert path '/rstudio/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/thredds/" (Attribute: Some("href")): Cannot convert path '/thredds/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] file:///home/runner/work/pecan/pecan/docker/docs/docs/pecan | Cannot find file: File not found. Check if file exists and path is correct
  • [ERROR] file:///home/runner/work/pecan/pecan/docker/docs/pkgdocs | Cannot find file: File not found. Check if file exists and path is correct
  • [403] https://join.slack.com/t/pecanproject/shared_invite/enQtMzkyODUyMjQyNTgzLWEzOTM1ZjhmYWUxNzYwYzkxMWVlODAyZWQwYjliYzA0MDA0MjE4YmMyOTFhMjYyMjYzN2FjODE4N2Y4YWFhZmQ | Rejected status code: 403 Forbidden (configurable with "accept" option)

Errors in documentation/index_vm.html

  • [ERROR] error: | Error building URL for "/bety/" (Attribute: Some("href")): Cannot convert path '/bety/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/pecan/" (Attribute: Some("href")): Cannot convert path '/pecan/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/pecan/history.php" (Attribute: Some("href")): Cannot convert path '/pecan/history.php' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/pecan/setups/" (Attribute: Some("href")): Cannot convert path '/pecan/setups/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/rstudio/" (Attribute: Some("href")): Cannot convert path '/rstudio/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] error: | Error building URL for "/shiny/" (Attribute: Some("href")): Cannot convert path '/shiny/' to a URI: To resolve root-relative links in local files, provide a root dir
  • [ERROR] file:///home/runner/work/pecan/pecan/documentation/pecan.pdf | Cannot find file: File not found. Check if file exists and path is correct
  • [403] https://join.slack.com/t/pecanproject/shared_invite/enQtMzkyODUyMjQyNTgzLWEzOTM1ZjhmYWUxNzYwYzkxMWVlODAyZWQwYjliYzA0MDA0MjE4YmMyOTFhMjYyMjYzN2FjODE4N2Y4YWFhZmQ | Rejected status code: 403 Forbidden (configurable with "accept" option)

Errors in documentation/tutorials/Demo_1_Basic_Run/download_sipnet.R

Errors in documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

Errors in documentation/tutorials/Demo_03_Meta_Analysis/meta_analysis.qmd

Errors in documentation/tutorials/old/01_Demo_Basic_Run/Demo01.Rmd

Errors in documentation/tutorials/old/02_Demo_Uncertainty_Analysis/Demo02.Rmd

Errors in models/biocro/inst/salix_benchmarks.Rmd

Errors in models/biocro/R/model2netcdf.BIOCRO.R

Errors in models/cable/README.md

Errors in models/dalec/inst/README.Rmd

Errors in models/dvmdostem/R/model2netcdf.dvmdostem.R

Errors in models/jules/README.md

Errors in models/rothc/inst/workflow_example/ERA5_nc_to_RothC.R

Errors in models/sibcasa/R/met2model.SIBCASA.R

Errors in modules/allometry/inst/manuscript/Allom.Rmd

Errors in modules/assim.batch/vignettes/AssimBatchVignette.html

Errors in modules/assim.batch/vignettes/AssimBatchVignette.Rmd

Errors in modules/assim.sequential/inst/anchor/IC_prep_anchorSites.Rmd

Errors in modules/assim.sequential/inst/hf_landscape/01_SiteSelection.Rmd

Errors in modules/assim.sequential/inst/NEFI/US_Los/download_Los.R

Errors in modules/assim.sequential/inst/NEFI/US_Los/download_Los_met.R

Errors in modules/assim.sequential/inst/NEFI/US_Potato/download_Potato.R

Errors in modules/assim.sequential/inst/NEFI/US_Syv/download_soilmoist_Syv.R

Errors in modules/assim.sequential/inst/NEFI/US_Syv/download_Syv.R

Errors in modules/assim.sequential/inst/NEFI/US_Syv/download_Syv_met.R

Errors in modules/assim.sequential/inst/NEFI/US_WCr/download_soilmoist_WCr.R

Errors in modules/assim.sequential/inst/NEFI/US_WCr/download_WCr.R

Errors in modules/assim.sequential/inst/NEFI/US_WCr/download_WCr_met.R

Errors in modules/assim.sequential/inst/NEFI/US_WLEF/download_soilmoist_WLEF.R

Errors in modules/assim.sequential/inst/sda_backup/bmorrison/ecoregion_lai_agb_trends.R

Errors in modules/assim.sequential/inst/sda_backup/bmorrison/Multisite_SDA_Bailey.R

Errors in modules/assim.sequential/inst/sda_backup/bmorrison/Multisite_SDA_Bailey_AGB_LAI.R

Errors in modules/assim.sequential/inst/sda_backup/bmorrison/Multisite_SDA_Shawn.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/R_scripts_2/Multisite_SDA_BNL.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/R_scripts_2/Multisite_SDA_BNL_updated.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/R_scripts_2/workflow_doconversions.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/R_scripts_2/workflow_metprocess.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/workflow.R

Errors in modules/assim.sequential/inst/sda_backup/sserbin/workflow_2.R

Errors in modules/assim.sequential/inst/WillowCreek/download_soilmoist_WCr.R

Errors in modules/assim.sequential/inst/WillowCreek/download_WCr.R

Errors in modules/benchmark/inst/scripts/benchmark.workflow.FATES_BCI.R

Errors in modules/data.atmosphere/inst/scripts/GetLSHRG.R

Errors in modules/data.atmosphere/inst/scripts/NARRinventory.R

Errors in modules/data.atmosphere/R/debias_met_regression.R

Errors in modules/data.atmosphere/R/download.Ameriflux.R

Errors in modules/data.atmosphere/R/download.CRUNCEP_Global.R

Errors in modules/data.atmosphere/R/download.Fluxnet2015.R

Errors in modules/data.atmosphere/R/download.FluxnetLaThuile.R

Errors in modules/data.atmosphere/R/download.Geostreams.R

Errors in modules/data.atmosphere/R/download.GFDL.R

Errors in modules/data.atmosphere/R/download.GLDAS.R

Errors in modules/data.atmosphere/R/download.ICOS.R

Errors in modules/data.atmosphere/R/download.MACA.R

Errors in modules/data.atmosphere/R/download.MsTMIP_NARR.R

Errors in modules/data.atmosphere/R/download.NARR_site.R

  • [ERROR] http://ashiklom/ | Network error: Connection failed. Check network connectivity and firewall settings (error sending request for url (http://ashiklom/)): Connection failed. Check network connectivity and firewall settings

Errors in modules/data.atmosphere/R/download.NLDAS.R

Errors in modules/data.atmosphere/R/download.PalEON_ENS.R

Errors in modules/data.atmosphere/R/download.US_WCr.R

Errors in modules/data.atmosphere/R/download.US_Wlef.R

Errors in modules/data.atmosphere/R/extract_ERA5.R

Errors in modules/data.atmosphere/R/extract_local_CMIP5.R

Errors in modules/data.atmosphere/R/extract_local_NLDAS.R

Errors in modules/data.atmosphere/R/GEFS_helper_functions.R

Errors in modules/data.atmosphere/R/solar_angle.R

Errors in modules/data.atmosphere/R/tdm_lm_ensemble_sims.R

Errors in modules/data.atmosphere/tests/testthat.R

Errors in modules/data.atmosphere/tests/testthat/test.download.GFDLR.R

Errors in modules/data.atmosphere/vignettes/ameriflux_demo.Rmd

Errors in modules/data.land/data-raw/create_fertilizer_data.R

Errors in modules/data.land/inst/download_vswc.R

Errors in modules/data.land/inst/LoadFLUXNETsites.R

  • [ERROR] file:///home/dietze/ListofAmeriFluxSites.html | Cannot find file: File not found. Check if file exists and path is correct
  • [404] http://fluxnet.ornl.gov/site/ | Rejected status code: 404 Not Found (configurable with "accept" option)
  • [404] http://fluxnet.ornl.gov/site_status | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in modules/data.land/inst/Multi_Site_IC_Process_Script.R

Errors in modules/data.land/R/calculate_co2_equivalent.R

Errors in modules/data.land/R/data.R

Errors in modules/data.land/R/download.SM_CDS.R

Errors in modules/data.land/R/extract_NEON_veg.R

Errors in modules/data.land/R/fia2ED.R

Errors in modules/data.land/R/fuse_plot_treering.R

Errors in modules/data.land/R/gis.functions.R

Errors in modules/data.land/R/gSSURGO_Query.R

Errors in modules/data.land/R/land.utils.R

Errors in modules/data.land/R/look_up_ca_n_rate.R

Errors in modules/data.land/R/look_up_fertilizer_components.R

Errors in modules/data.land/R/openET.R

Errors in modules/data.land/R/plot2AGB.R

Errors in modules/data.land/R/read.plot.R

Errors in modules/data.land/R/soilgrids_soc_extraction.R

Errors in modules/data.land/R/soilgrids_texture_extract.R

Errors in modules/data.land/tests/testthat.R

Errors in modules/data.remote/R/download.thredds.AVHRR.monthAGG.R

Errors in modules/data.remote/R/download.thredds.AVHRR.R

Errors in modules/data.remote/R/download.thredds.R

Errors in modules/data.remote/R/NASA_DAAC_download.R

Errors in modules/data.remote/R/NLCD.R

Errors in modules/data.remote/R/Prep_AGB_IC_from_2010_global.R

Errors in modules/priors/vignettes/priors_demo.Rmd

Errors in README.md

Errors in scripts/build_pkgdown.R

Errors in scripts/workflow.bm.R

Errors in scripts/workflow.pda.R

Errors in scripts/workflow.wcr.assim.R

Errors in shiny/Data-Ingest/modules/d1_download_module.R

Errors in shiny/Data-Ingest/ui_files/d1_download_ui.R

Errors in shiny/dbsync/app.R

Errors in shiny/ForecastingDashboard/WcR_Test.Rmd

Errors in shiny/SDAdashboard/server.R

Errors in web/plot.netcdf.R

Errors in web/workflow.R

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