From cec50c09dc07f11c1df0d4ebcfd469dbad940177 Mon Sep 17 00:00:00 2001
From: Taksh <takshkothari09@gmail.com>
Date: Thu, 16 Jul 2026 18:53:02 +0300
Subject: [PATCH] Use basename for sqlite import.sh table names.

Nested paths like hosp/admissions.csv.gz became table hosp/admissions.

Co-authored-by: Cursor <cursoragent@cursor.com>
---
 mimic-iv/buildmimic/sqlite/import.sh | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/mimic-iv/buildmimic/sqlite/import.sh b/mimic-iv/buildmimic/sqlite/import.sh
index 1c116629e..08ded2881 100755
--- a/mimic-iv/buildmimic/sqlite/import.sh
+++ b/mimic-iv/buildmimic/sqlite/import.sh
@@ -24,8 +24,9 @@ fi
 for FILE in */**.csv*; do
       # skip loop if glob didn't match an actual file
       [ -f "$FILE" ] || continue
-      # trim off extension and lowercase file stem (e.g., HELLO.csv -> hello)
-      TABLE_NAME=$(echo "${FILE%%.*}" | tr "[:upper:]" "[:lower:]")
+      # basename then stem: hosp/ADMISSIONS.csv.gz -> admissions (not hosp/admissions)
+      BASENAME=$(basename "$FILE")
+      TABLE_NAME=$(echo "${BASENAME%%.*}" | tr "[:upper:]" "[:lower:]")
       case "$FILE" in
           *csv)
               IMPORT_CMD=".import $FILE $TABLE_NAME"