I am wanting to run TractSeg using the trained_weights for the acoustic radiations provided by Rodrigo’s group ([https://zenodo.org/records/7052849] (https://url.au.m.mimecastprotect.com/s/l59lCE8knvsWyDRpNINfXC7qesb?domain=zenodo.org)), however, I am unable to get the –exp_name command working. I continue to encounter issues with the filepath:
TractSeg -i peaks.nii.gz --exp_name best_weights_ep110 --verbose
Traceback (most recent call last):
File "/home/julien/anaconda3/bin/TractSeg", line 420, in
main()
File "/home/julien/anaconda3/bin/TractSeg", line 201, in main
Config = exp_utils.load_config_from_txt(join(C.EXP_PATH,
File "/home/julien/anaconda3/lib/python3.9/site-packages/tractseg/libs/exp_utils.py", line 175, in load_config_from_txt
config_str = open(path, "r").read()
FileNotFoundError: [Errno 2] No such file or directory: '/home/julien/TractSeg/hcp_exp/best_weights_ep110/Hyperparameters.txt'
Where should non-TractSeg weights be saved in order for them to work with the exp_name command and is the Hyperparameters.txt file necessary?
I am wanting to run TractSeg using the trained_weights for the acoustic radiations provided by Rodrigo’s group ([https://zenodo.org/records/7052849] (https://url.au.m.mimecastprotect.com/s/l59lCE8knvsWyDRpNINfXC7qesb?domain=zenodo.org)), however, I am unable to get the –exp_name command working. I continue to encounter issues with the filepath:
TractSeg -i peaks.nii.gz --exp_name best_weights_ep110 --verbose
Traceback (most recent call last):
File "/home/julien/anaconda3/bin/TractSeg", line 420, in
main()
File "/home/julien/anaconda3/bin/TractSeg", line 201, in main
Config = exp_utils.load_config_from_txt(join(C.EXP_PATH,
File "/home/julien/anaconda3/lib/python3.9/site-packages/tractseg/libs/exp_utils.py", line 175, in load_config_from_txt
config_str = open(path, "r").read()
FileNotFoundError: [Errno 2] No such file or directory: '/home/julien/TractSeg/hcp_exp/best_weights_ep110/Hyperparameters.txt'
Where should non-TractSeg weights be saved in order for them to work with the exp_name command and is the Hyperparameters.txt file necessary?