Thanks for putting together these test suites, very nice work!
I have some usability questions (possibly issues):
A) Minor: it's unclear what model formats are accepted, since it's just a string of the model file. The example points to json, which is not what I would have expected.
B) Minor: it's unclear to me why there is the need to have 3 different docker images instead of one. As a user, I'd prefer to have one image that includes all everything (including dependencies), and pass different commands to it with docker run.
C) Major: I can't seem to run the Memote-style test on yeast-GEM:
FBCModelTests.Memote.generate_report("yeast-GEM.mat", Tulip.Optimizer)
since it ends up in an infinite loop that prints:
^C┌ Warning: Increase regularizations to 1.4901161193847656e-6
└ @ Tulip ~/.julia/packages/Tulip/SRdil/src/IPM/HSD/step.jl:47
Thanks for putting together these test suites, very nice work!
I have some usability questions (possibly issues):
A) Minor: it's unclear what model formats are accepted, since it's just a string of the model file. The example points to json, which is not what I would have expected.
B) Minor: it's unclear to me why there is the need to have 3 different docker images instead of one. As a user, I'd prefer to have one image that includes all everything (including dependencies), and pass different commands to it with
docker run.C) Major: I can't seem to run the Memote-style test on yeast-GEM:
since it ends up in an infinite loop that prints: