PROJECT NOT UNDER ACTIVE MANAGEMENT
This project will no longer be maintained by Intel.
Intel has ceased development and contributions including, but not limited to, maintenance, bug fixes, new releases, or updates, to this project.
Intel no longer accepts patches to this project.
If you have an ongoing need to use this project, are interested in independently developing it, or would like to maintain patches for the open source software community, please create your own fork of this project.
Contact: webadmin@linux.intel.com
Intel® Select Solutions for Genomics Analytics is an end-to-end, optimized hardware and software solution for analyzing genomic data. It provides a way to run pre-packaged, optimized workflows, including the Genome Analysis Toolkit* (GATK*) Best Practices workflows from the Broad Institute.
This repo contains a simple smoketest benchmark for HPC clusters ("20k Throughput Run"). The test ensures your HPC system is configured correctly to run whole genome and whole exome samples.
For an overview on how to set up an HPC cluster for running GATK, see the Broad documentation here. An overview of the Intel Solution, including a HW reference design, can be found here.
For detailed, line-by-line instructions on how to configure an HPC system for running genomics workflows, please contact your Intel representative.