diff --git a/README.md b/README.md index cc18d01b..d4ecfde9 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # IntGenomicsLab/lrsomatic [![GitHub Actions CI Status](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/nf-test.yml/badge.svg)](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/nf-test.yml) -[![GitHub Actions Linting Status](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/linting.yml/badge.svg)](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/linting.yml)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![GitHub Actions Linting Status](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/linting.yml/badge.svg)](https://github.com/IntGenomicsLab/lrsomatic/actions/workflows/linting.yml)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.17751829-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.17751829) [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.04.0-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) @@ -23,6 +23,8 @@ Developed using **Nextflow DSL2**, it offers high portability and scalability ac ## Pipeline summary +![image](./assets/lrsomatic_1.0.png) + **1) Pre-processing:** a. Raw read QC ([`cramino`](https://github.com/wdecoster/cramino)) @@ -159,8 +161,7 @@ If you would like to contribute to this pipeline, please see the [contributing g ## Citations - - +If you use IntGenomicsLab/lrsomatic for your analysis, please cite it using the following doi: [10.5281/zenodo.17751829](https://doi.org/10.5281/zenodo.17751829) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/assets/lrsomatic_1.0.png b/assets/lrsomatic_1.0.png new file mode 100644 index 00000000..dd803e0c Binary files /dev/null and b/assets/lrsomatic_1.0.png differ