From 8c57be4a85676bc8723965ce16c3f4f6d3e44c93 Mon Sep 17 00:00:00 2001 From: PaulJonasJost Date: Thu, 18 Dec 2025 15:16:11 +0100 Subject: [PATCH 1/2] temporarily deactive to track changes --- test/base/test_roadrunner.py | 2 -- test/petab/test_petabSimulator.py | 4 ---- 2 files changed, 6 deletions(-) diff --git a/test/base/test_roadrunner.py b/test/base/test_roadrunner.py index a7054a769..58d0cc844 100644 --- a/test/base/test_roadrunner.py +++ b/test/base/test_roadrunner.py @@ -45,8 +45,6 @@ def test_petab_case(case, model_type, version): def _execute_case_rr(case, model_type, version): """Run a single PEtab test suite case""" case = petabtests.test_id_str(case) - if case == "0018" and model_type == "sbml" and version == "v1.0.0": - pytest.skip("https://github.com/ICB-DCM/pyPESTO/issues/1597") logger.info(f"Case {case}") # case folder diff --git a/test/petab/test_petabSimulator.py b/test/petab/test_petabSimulator.py index ea2638533..65db1aa83 100644 --- a/test/petab/test_petabSimulator.py +++ b/test/petab/test_petabSimulator.py @@ -22,10 +22,6 @@ ) def test_petab_case(case, model_type, version): """Wrapper for _execute_case for handling test outcomes""" - # FIXME https://github.com/ICB-DCM/pyPESTO/issues/1583 - if model_type == "sbml" and version == "v1.0.0" and case == "0020": - pytest.xfail(reason="https://github.com/ICB-DCM/pyPESTO/issues/1583") - try: _execute_case(case, model_type, version) except Exception as e: From f7bf93eefb92bb26f601c12d87e4a1658c0f84cb Mon Sep 17 00:00:00 2001 From: PaulJonasJost Date: Tue, 24 Mar 2026 10:28:38 +0100 Subject: [PATCH 2/2] Julia test potential fix --- doc/example/conversion_reaction/PEtabJl_module.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/example/conversion_reaction/PEtabJl_module.jl b/doc/example/conversion_reaction/PEtabJl_module.jl index f1bac1935..d29007880 100644 --- a/doc/example/conversion_reaction/PEtabJl_module.jl +++ b/doc/example/conversion_reaction/PEtabJl_module.jl @@ -10,7 +10,7 @@ petabModel = PEtabModel(pathYaml, verbose=true) # A full list of options for PEtabODEProblem can be found at https://sebapersson.github.io/PEtab.jl/stable/API_choosen/ petabProblem = PEtabODEProblem( petabModel, - ode_solver=ODESolver(Rodas5P(), abstol=1e-08, reltol=1e-08, maxiters=Int64(1e4)), + odesolver=ODESolver(Rodas5P(), abstol=1e-08, reltol=1e-08, maxiters=Int64(1e4)), gradient_method=:ForwardDiff, hessian_method=:ForwardDiff, sparse_jacobian=nothing,