diff --git a/_cite/.cache/66/50/91bf0731e6ba218a937da9fcf5aa.val b/_cite/.cache/81/de/8028efe19b08f517e18b478e22d5.val
similarity index 81%
rename from _cite/.cache/66/50/91bf0731e6ba218a937da9fcf5aa.val
rename to _cite/.cache/81/de/8028efe19b08f517e18b478e22d5.val
index 19776b5..8fa5356 100644
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index b1b1ef9..2bca3c3 100644
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diff --git a/_data/citations.yaml b/_data/citations.yaml
index b4dd003..ffe13ee 100644
--- a/_data/citations.yaml
+++ b/_data/citations.yaml
@@ -1,12 +1,54 @@
# DO NOT EDIT, GENERATED AUTOMATICALLY
+- id: doi:10.1093/bioinformatics/btag451
+ title: pendingpublications
+ authors: []
+ publisher: ''
+ date: ''
+ link: https://doi.org/hb8x23
+ orcid: 0000-0002-1298-9763
+ plugin: orcid.py
+ file: orcid.yaml
+- id: doi:10.64898/2026.04.12.718028
+ title: 'CROssBARv2: A Unified Computational Framework for Heterogeneous Biomedical
+ Data Representation and LLM-Driven Exploration'
+ authors:
+ - "B\xFCnyamin \u015Een"
+ - Erva Ulusoy
+ - Melih Darcan
+ - "Mert Erg\xFCn"
+ - Sebastian Lobentanzer
+ - Ahmet S. Rifaioglu
+ - "D\xE9nes T\xFCrei"
+ - Julio Saez-Rodriguez
+ - "Tunca Do\u011Fan"
+ publisher: openRxiv
+ date: '2026-04-15'
+ link: https://doi.org/hbxpwg
+ orcid: 0000-0002-1298-9763
+ plugin: orcid.py
+ file: orcid.yaml
+- id: doi:10.64898/2026.03.17.712340
+ title: 'SELFormerMM: multimodal molecular representation learning via SELFIES, structure,
+ text, and knowledge graph integration'
+ authors:
+ - Erva Ulusoy
+ - "\u015Eevval Bostanc\u0131"
+ - Bora Engin Deniz
+ - "Tunca Do\u011Fan"
+ publisher: openRxiv
+ date: '2026-03-19'
+ link: https://doi.org/hbtf3b
+ orcid: 0000-0002-1298-9763
+ plugin: orcid.py
+ file: orcid.yaml
- id: doi:10.1101/2025.11.05.686382
title: 'ECLIPSE: Exploration of Complex Ligand-Protein Interactions through Learning
from Systems-level Heterogeneous Biomedical Knowledge Graphs'
authors:
- Heval Atas Guvenilir
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2025-11-07'
link: https://doi.org/g99tmt
orcid: 0000-0002-1298-9763
@@ -22,7 +64,7 @@
- Aybar C. Acar
- "Tunca Do\u011Fan"
- M. Volkan Atalay
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2025-09-19'
link: https://doi.org/g939mb
orcid: 0000-0002-1298-9763
@@ -59,7 +101,7 @@
- Jaffar A. Al-Tawfiq
- Qiuwei Pan
publisher: Journal of Virology
- date: '2025-08-11'
+ date: '2025-09-23'
link: https://doi.org/g9x39h
orcid: 0000-0002-1298-9763
plugin: orcid.py
@@ -85,7 +127,7 @@
authors:
- Erva Ulusoy
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2025-04-24'
link: https://doi.org/g9xshp
orcid: 0000-0002-1298-9763
@@ -100,7 +142,7 @@
- Erva Ulusoy
- "Ardan Y\u0131lmaz"
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2025-04-16'
link: https://doi.org/g9xshq
orcid: 0000-0002-1298-9763
@@ -138,8 +180,8 @@
plugin: orcid.py
file: orcid.yaml
- id: doi:10.1002/pro.4988
- title: "Mutual annotation\u2010based prediction of protein domain functions with\
- \ Domain2GO"
+ title: "Mutual annotation\u2010based prediction of protein domain functions with\n\
+ \ Domain2GO"
authors:
- Erva Ulusoy
- "Tunca Do\u011Fan"
@@ -298,7 +340,7 @@
authors:
- Erva Ulusoy
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2022-11-04'
link: https://doi.org/g9xsh5
orcid: 0000-0002-1298-9763
@@ -327,7 +369,7 @@
authors:
- Heval Atas
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2022-05-01'
link: https://doi.org/g9xsh7
orcid: 0000-0002-1298-9763
@@ -434,7 +476,7 @@
- Ian Baxendale
- Maria Martin
- Rengul Cetin-Atalay
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2021-06-14'
link: https://doi.org/g9xsjc
orcid: 0000-0002-1298-9763
@@ -466,7 +508,7 @@
- Kemal Turhan
- Aybar C. Acar
- "Tunca Do\u011Fan"
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2020-10-28'
link: https://doi.org/g59tf3
orcid: 0000-0002-1298-9763
@@ -489,7 +531,7 @@
- Rengul Cetin-Atalay
- Maria Martin
- Volkan Atalay
- publisher: Cold Spring Harbor Laboratory
+ publisher: openRxiv
date: '2020-09-15'
link: https://doi.org/gk7dm6
orcid: 0000-0002-1298-9763