calculatePromoterReadCounts were not running

[GuangyaoL]

hi~
proActiv::calculatePromoterReadCounts(files=files, promoterAnnotation = promoterAnnotion.genecode.dm6.subset,fileType="star")

we counted promoters count by using this function and found that ···Error: 'calculatePromoterReadCounts' is not an exported object from 'namespace:proActiv' ···

[jleechung]

Hi @GuangyaoL,

What version of proActiv are you running?

calculatePromoterReadCounts has been deprecated in the current version of proActiv. Please see the workflow for the latest version here, which runs proActiv in a single command.

Alternatively, you can use the original implementation of proActiv, by downloading this release.