MetVAE-PyPI/setup.py at devel · FrederickHuangLin/MetVAE-PyPI · GitHub

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from pathlib import Path
from setuptools import find_packages, setup

classes = """
    License :: OSI Approved :: MIT License
    Topic :: Software Development :: Libraries
    Topic :: Scientific/Engineering
    Topic :: Scientific/Engineering :: Bio-Informatics
    Programming Language :: Python :: 3
    Operating System :: OS Independent
"""
classifiers = [s.strip() for s in classes.split('\n') if s]

description = ('Metabolomics Variational Autoencoders.')

# Read README with explicit encoding (avoids Unicode issues on Windows)
this_dir = Path(__file__).parent
long_description = (this_dir / "README.md").read_text(encoding="utf-8")

setup(name='metvae',
      version='1.0.0',
      description=description,
      long_description=open("README.md").read(),
      long_description_content_type="text/markdown",
      author="Huang Lin",
      author_email="huanglinfrederick@gmail.com",
      maintainer="Huang Lin",
      maintainer_email="huanglinfrederick@gmail.com",
      url="https://github.com/FrederickHuangLin/MetVAE-PyPI",
      license="MIT",
      license_files=["LICENSE"],
      packages=find_packages(exclude=['tests', 'tests.*']),  # Excludes tests
      install_requires=[
          'joblib>=1.2.0',
          'numpy>=1.20.0',
          'scipy',
          'statsmodels',
          'tensorboard',
          'tqdm',
          'pandas>=1.0.0',
          'torch>=1.8.0',
          'pytorch-lightning>=1.3.1',
          "networkx>=2.6"
      ],
      classifiers=classifiers,
      python_requires=">=3.9",
      entry_points = {
          'console_scripts': [
              'metvae-cli=metvae.cli:main'
          ]
      }
     )