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Indexation fails with constraint violation #5

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@denos

Indexation fails with this message

Catalog URL Rewrites index process unknown error:
exception 'PDOException' with message 'SQLSTATE[23000]: Integrity constraint violation: 1062 Duplicate entry 'product/100053/4-1-1' for key 'UNQ_CORE_URL_REWRITE_ID_PATH_IS_SYSTEM_STORE_ID'' in /home/www/magento3/lib/Zend/Db/Statement/Pdo.php:228
Stack trace:
#0 /home/www/magento3/lib/Zend/Db/Statement/Pdo.php(228): PDOStatement->execute(Array)
#1 /home/www/magento3/lib/Varien/Db/Statement/Pdo/Mysql.php(110): Zend_Db_Statement_Pdo->_execute(Array)
#2 /home/www/magento3/lib/Zend/Db/Statement.php(300): Varien_Db_Statement_Pdo_Mysql->_execute(Array)
#3 /home/www/magento3/lib/Zend/Db/Adapter/Abstract.php(479): Zend_Db_Statement->execute(Array)
#4 /home/www/magento3/lib/Zend/Db/Adapter/Pdo/Abstract.php(238): Zend_Db_Adapter_Abstract->query('INSERT INTO co...', Array) #5 /home/www/magento3/lib/Varien/Db/Adapter/Pdo/Mysql.php(389): Zend_Db_Adapter_Pdo_Abstract->query('INSERT INTO co...', Array)
#6 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Mysql4/Indexer.php(2040): Varien_Db_Adapter_Pdo_Mysql->query('INSERT INTO `co...')
#7 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Mysql4/Indexer.php(2164): EcomDev_UrlRewrite_Model_Mysql4_Indexer->_updateRewrites()
#8 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Indexer.php(97): EcomDev_UrlRewrite_Model_Mysql4_Indexer->reindexAll()
#9 /home/www/magento3/app/code/core/Mage/Index/Model/Process.php(207): EcomDev_UrlRewrite_Model_Indexer->reindexAll()
#10 /home/www/magento3/app/code/core/Mage/Index/Model/Process.php(253): Mage_Index_Model_Process->reindexAll()
#11 /home/www/magento3/shell/indexer.php(158): Mage_Index_Model_Process->reindexEverything()
#12 /home/www/magento3/shell/indexer.php(198): Mage_Shell_Compiler->run()
#13 {main}

Next exception 'Zend_Db_Statement_Exception' with message 'SQLSTATE[23000]: Integrity constraint violation: 1062 Duplicate entry 'product/100053/4-1-1' for key 'UNQ_CORE_URL_REWRITE_ID_PATH_IS_SYSTEM_STORE_ID'' in /home/www/magento3/lib/Zend/Db/Statement/Pdo.php:234
Stack trace:
#0 /home/www/magento3/lib/Varien/Db/Statement/Pdo/Mysql.php(110): Zend_Db_Statement_Pdo->_execute(Array)
#1 /home/www/magento3/lib/Zend/Db/Statement.php(300): Varien_Db_Statement_Pdo_Mysql->_execute(Array)
#2 /home/www/magento3/lib/Zend/Db/Adapter/Abstract.php(479): Zend_Db_Statement->execute(Array)
#3 /home/www/magento3/lib/Zend/Db/Adapter/Pdo/Abstract.php(238): Zend_Db_Adapter_Abstract->query('INSERT INTO co...', Array) #4 /home/www/magento3/lib/Varien/Db/Adapter/Pdo/Mysql.php(389): Zend_Db_Adapter_Pdo_Abstract->query('INSERT INTO co...', Array)
#5 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Mysql4/Indexer.php(2040): Varien_Db_Adapter_Pdo_Mysql->query('INSERT INTO `co...')
#6 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Mysql4/Indexer.php(2164): EcomDev_UrlRewrite_Model_Mysql4_Indexer->_updateRewrites()
#7 /home/www/magento3/app/code/community/EcomDev/UrlRewrite/Model/Indexer.php(97): EcomDev_UrlRewrite_Model_Mysql4_Indexer->reindexAll()
#8 /home/www/magento3/app/code/core/Mage/Index/Model/Process.php(207): EcomDev_UrlRewrite_Model_Indexer->reindexAll()
#9 /home/www/magento3/app/code/core/Mage/Index/Model/Process.php(253): Mage_Index_Model_Process->reindexAll()
#10 /home/www/magento3/shell/indexer.php(158): Mage_Index_Model_Process->reindexEverything()
#11 /home/www/magento3/shell/indexer.php(198): Mage_Shell_Compiler->run()
#12 {main}

Magento 1.6.2 with 200k products

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