Is there a way to add additional UCSC tracks?

[jnhnguyen01]

Hi,

I was wondering if there was a way to add additional UCSC tracks? Like CpG islands or cCREs, etc.

Thanks!

[e-sollier]

Hi,

yes, you can download the data of the UCSC tracks in the UCSC table browser, for example CpG islands: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=3612952273_MWr32dMEWUNGQuZxQRt8HA3Ikh2r&clade=mammal&org=Human&db=hg38&hgta_group=regulation&hgta_track=problematic&hgta_table=0&hgta_regionType=genome&position=chr7%3A155%2C799%2C529-155%2C812%2C871&hgta_outputType=primaryTable&hgta_outFileName=cpg_islands.bed . Then, in figeno, you can add a bed track, and use the downloaded file.